UHGV-0150266

Genome information

Genome length 19,525 bps

CDS count 35

Completeness 55.25% (medium-quality)

geNomad score 0.9526

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150266
vOTU ID	vOTU-027423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_434397
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9526
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.39
Jumbo phage	No

Genome content
Genome length	19,525 bps
GC content	53.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	80.73%
Average CDS length	460.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150266_1	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0150266_1	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0150266_1	UniRef90	UniRef90_A0A412V593	Collagen-like protein	NA
UHGV-0150266_1	eggNOG-mapper	476272.RUMHYD_03263	Collagen triple helix repeat	NA
UHGV-0150266_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0150266_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0150266_2	PHROG	phrog_13256	NA	unknown function
UHGV-0150266_2	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0150266_3	KOfam	K14059	int; integrase	NA
UHGV-0150266_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0150266_3	UniRef90	UniRef90_R5HDB9	Integrase family protein	NA
UHGV-0150266_3	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0150266_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0150266_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0150266_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0150266_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0150266_4	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0150266_4	PHROG	phrog_12747	NA	unknown function
UHGV-0150266_4	UniRef90	UniRef90_A0A349AR29	Cell filamentation protein Fic	NA
UHGV-0150266_4	eggNOG-mapper	1123075.AUDP01000004_gene836	Fic/DOC family	NA
UHGV-0150266_4	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0150266_4	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0150266_4	Structural annotation	PF02661, NF007672, COG2184	NA	NA
UHGV-0150266_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0150266_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0150266_5	UniRef90	UniRef90_UPI00164C6CD0	XRE family transcriptional regulator	NA
UHGV-0150266_5	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0150266_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150266_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0150266_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0150266_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0150266_6	UniRef90	UniRef90_UPI0004E26D7B	helix-turn-helix transcriptional regulator	NA
UHGV-0150266_6	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-0150266_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150266_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0150266_7	eggNOG-mapper	517418.Ctha_0322	NA	NA
UHGV-0150266_7	Structural annotation	PF18186, NF033632	NA	NA
UHGV-0150266_16	UniRef90	UniRef90_A0A7X5EEB6	XRE family transcriptional regulator	NA
UHGV-0150266_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150266_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0150266_16	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0150266_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0150266_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150266_17	UniRef90	UniRef90_A0A1C5W216	HTH-type transcriptional regulator immR	NA
UHGV-0150266_17	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0150266_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0150266_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150266_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0150266_17	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0150266_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0150266_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150266_21	UniRef90	UniRef90_A0A1H0W5S2	Helix-turn-helix domain-containing protein	NA
UHGV-0150266_21	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0150266_21	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0150266_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0150266_21	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0150266_24	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150266_24	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0150266_24	eggNOG-mapper	1235835.C814_02333	NA	NA
UHGV-0150266_24	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0150266_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0150266_24	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0150266_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0150266_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0150266_25	UniRef90	UniRef90_A0A1C6BCB2	DNA helicase	NA
UHGV-0150266_25	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0150266_25	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0150266_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0150266_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0150266_25	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0150266_27	PHROG	phrog_474	phosphofructokinase	other
UHGV-0150266_27	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0150266_27	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0150266_27	Pfam	PF19905	NA	DUF6378
UHGV-0150266_27	Structural annotation	PF19905	NA	NA
UHGV-0150266_28	PHROG	phrog_10714	NA	unknown function
UHGV-0150266_28	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0150266_28	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0150266_30	Structural annotation	NF011227	NA	NA
UHGV-0150266_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150266_32	eggNOG-mapper	1226322.HMPREF1545_00109	NA	NA
UHGV-0150266_32	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0150266_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150266_33	UniRef90	UniRef90_A0A8J6J0T2	HNH endonuclease	NA
UHGV-0150266_33	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0150266_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0150266_33	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0150266_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0150266_34	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-0150266_34	eggNOG-mapper	1501230.ET33_02275	Phage terminase, small subunit	NA
UHGV-0150266_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0150266_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0150266_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0150266_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0150266_35	UniRef90	UniRef90_A0A6N3FX18	Phage Terminase	NA
UHGV-0150266_35	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0150266_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0150266_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0150266_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0150266_35	Structural annotation	PF03354, PF20441, MF_04146, TIGR01547, COG4626	NA	NA