UHGV-0150419

Genome information

Genome length 40,464 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150419
vOTU ID	vOTU-055597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_398849
BioSample	SAMN05065778
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.87
Jumbo phage	No

Genome content
Genome length	40,464 bps
GC content	41.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.15%
Average CDS length	545.34 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150419_2	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0150419_3	PHROG	phrog_18444	NA	unknown function
UHGV-0150419_4	PHROG	phrog_6616	tail protein	tail
UHGV-0150419_4	UniRef90	UniRef90_A0A173R8I5	Peptidase S74 domain-containing protein	NA
UHGV-0150419_4	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0150419_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0150419_5	PHROG	phrog_1194	NA	unknown function
UHGV-0150419_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0150419_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0150419_6	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0150419_6	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0150419_6	COG	COG5412	Phage-related protein	NA
UHGV-0150419_7	PHROG	phrog_706	NA	unknown function
UHGV-0150419_7	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-0150419_7	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0150419_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0150419_7	Structural annotation	PF06854	NA	NA
UHGV-0150419_8	PHROG	phrog_11299	NA	unknown function
UHGV-0150419_8	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0150419_8	Structural annotation	PF10666	NA	NA
UHGV-0150419_9	PHROG	phrog_3099	NA	unknown function
UHGV-0150419_9	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0150419_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0150419_10	PHROG	phrog_3266	tail completion	connector
UHGV-0150419_10	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0150419_10	Structural annotation	PF12691	NA	NA
UHGV-0150419_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0150419_11	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0150419_11	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0150419_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0150419_11	Structural annotation	PF11114	NA	NA
UHGV-0150419_12	PHROG	phrog_3366	NA	unknown function
UHGV-0150419_12	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0150419_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0150419_14	PHROG	phrog_1233	NA	unknown function
UHGV-0150419_14	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0150419_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0150419_15	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0150419_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0150419_16	UniRef90	UniRef90_UPI00156F9026	phage coat protein	NA
UHGV-0150419_16	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0150419_16	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0150419_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0150419_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0150419_17	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0150419_17	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0150419_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0150419_17	Structural annotation	PF06810	NA	NA
UHGV-0150419_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0150419_18	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-0150419_18	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0150419_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0150419_18	COG	COG2369	NA	NA
UHGV-0150419_18	Structural annotation	PF06152	NA	NA
UHGV-0150419_19	PHROG	phrog_419	NA	unknown function
UHGV-0150419_19	UniRef90	UniRef90_A0A0Y3MTG9	Prophage Lp2 protein 33	NA
UHGV-0150419_19	eggNOG-mapper	1444310.JANV01000162_gene1177	NA	NA
UHGV-0150419_19	Structural annotation	PF14083	NA	NA
UHGV-0150419_20	PHROG	phrog_1129	holin	lysis
UHGV-0150419_20	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0150419_20	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0150419_20	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0150419_20	Structural annotation	PF16079	NA	NA
UHGV-0150419_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0150419_21	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-0150419_21	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0150419_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0150419_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0150419_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0150419_23	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0150419_23	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0150419_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0150419_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0150419_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0150419_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0150419_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0150419_23	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0150419_24	PHROG	phrog_33130	NA	unknown function
UHGV-0150419_24	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0150419_24	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0150419_25	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0150419_29	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0150419_33	Structural annotation	PF04319, COG4014	NA	NA
UHGV-0150419_34	UniRef90	UniRef90_UPI001F178C7B	NA	NA
UHGV-0150419_34	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0150419_37	PHROG	phrog_37410	NA	unknown function
UHGV-0150419_38	PHROG	phrog_17690	NA	unknown function
UHGV-0150419_38	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0150419_38	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0150419_39	Structural annotation	PF17399	NA	NA
UHGV-0150419_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0150419_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0150419_40	UniRef90	UniRef90_UPI00156EFE80	ATP-binding protein	NA
UHGV-0150419_40	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0150419_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0150419_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0150419_40	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0150419_41	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0150419_41	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0150419_41	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0150419_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0150419_41	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0150419_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0150419_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0150419_42	UniRef90	UniRef90_UPI00157032DC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0150419_42	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0150419_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0150419_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0150419_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0150419_43	PHROG	phrog_398	NA	unknown function
UHGV-0150419_43	UniRef90	UniRef90_UPI00157064FA	putative HNHc nuclease	NA
UHGV-0150419_43	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0150419_43	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0150419_43	Structural annotation	PF16784	NA	NA
UHGV-0150419_44	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0150419_44	UniRef90	UniRef90_UPI00191DCC2D	NA	NA
UHGV-0150419_44	eggNOG-mapper	1140001.I571_01714	NA	NA
UHGV-0150419_44	Pfam	PF06378	NA	DUF1071
UHGV-0150419_44	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0150419_45	PHROG	phrog_30234	NA	unknown function
UHGV-0150419_45	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0150419_46	Structural annotation	PF11280	NA	NA
UHGV-0150419_47	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0150419_47	PHROG	phrog_9562	NA	unknown function
UHGV-0150419_47	UniRef90	UniRef90_A0A349YSQ2	Pentapeptide repeat-containing protein	NA
UHGV-0150419_47	eggNOG-mapper	1235799.C818_02626	Pentapeptide repeats (9 copies)	NA
UHGV-0150419_47	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0150419_47	Pfam	PF19062	NA	DUF5758
UHGV-0150419_47	COG	COG1357	NA	NA
UHGV-0150419_47	Structural annotation	PF19062, PF13599	NA	NA
UHGV-0150419_48	PHROG	phrog_30860	NA	unknown function
UHGV-0150419_49	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-0150419_52	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0150419_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150419_52	UniRef90	UniRef90_UPI00156DE017	helix-turn-helix domain-containing protein	NA
UHGV-0150419_52	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-0150419_52	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0150419_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0150419_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0150419_54	UniRef90	UniRef90_UPI001D05CE63	hydrogenase maturation nickel metallochaperone HypA	NA
UHGV-0150419_54	eggNOG-mapper	658086.HMPREF0994_06488	NA	NA
UHGV-0150419_54	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0150419_55	PHROG	phrog_31229	NA	unknown function
UHGV-0150419_55	eggNOG-mapper	661087.HMPREF1008_00430	NA	NA
UHGV-0150419_56	eggNOG-mapper	877420.ATVW01000018_gene1670	NA	NA
UHGV-0150419_57	KOfam	K14059	int; integrase	NA
UHGV-0150419_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0150419_57	UniRef90	UniRef90_A0A2Z4UCR8	Tyr recombinase domain-containing protein	NA
UHGV-0150419_57	eggNOG-mapper	33035.JPJF01000091_gene89	Phage integrase family	NA
UHGV-0150419_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0150419_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0150419_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0150419_59	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0150419_59	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0150419_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0150419_59	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0150419_61	KOfam	K14059	int; integrase	NA
UHGV-0150419_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0150419_61	UniRef90	UniRef90_UPI00164A4E4A	site-specific integrase	NA
UHGV-0150419_61	eggNOG-mapper	1382358.JHVN01000005_gene3032	Phage integrase family	NA
UHGV-0150419_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0150419_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0150419_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0150419_61	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0150419_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0150419_62	PHROG	phrog_435	endolysin	lysis
UHGV-0150419_62	UniRef90	UniRef90_F7KTY1	MurNAc-LAA domain-containing protein	NA
UHGV-0150419_62	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0150419_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0150419_62	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0150419_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0150419_62	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0150419_63	PHROG	phrog_443	holin	lysis
UHGV-0150419_63	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0150419_63	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0150419_63	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0150419_63	Structural annotation	PF16945	NA	NA
UHGV-0150419_65	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0150419_66	PHROG	phrog_16164	NA	unknown function
UHGV-0150419_66	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0150419_66	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0150419_67	Structural annotation	NF040910	NA	NA
UHGV-0150419_68	eggNOG-mapper	537007.BLAHAN_05250	NA	NA