UHGV-0150489

Genome information

Genome length 38,222 bps

CDS count 56

Completeness 95.99% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150489
vOTU ID	vOTU-060135
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_408133
BioSample	SAMN05414932
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.79
Jumbo phage	No

Genome content
Genome length	38,222 bps
GC content	47.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.59%
Average CDS length	627.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150489_1	KOfam	K20974	K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]	NA
UHGV-0150489_1	PHROG	phrog_20458	NA	unknown function
UHGV-0150489_1	UniRef90	UniRef90_A0A350TZJ0	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0150489_1	eggNOG-mapper	457412.RSAG_00853	His Kinase A (phosphoacceptor) domain	NA
UHGV-0150489_1	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0150489_1	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0150489_1	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0150489_1	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0150489_3	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0150489_3	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0150489_3	UniRef90	UniRef90_A0A396NP33	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0150489_3	eggNOG-mapper	796940.HMPREF9628_01282	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0150489_3	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0150489_3	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0150489_3	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0150489_3	COG	COG0338	DNA-adenine methylase	NA
UHGV-0150489_3	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0150489_4	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0150489_4	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0150489_4	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0150489_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0150489_4	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0150489_5	PHROG	phrog_36029	NA	unknown function
UHGV-0150489_5	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0150489_5	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0150489_7	PHROG	phrog_937	hemolysin	other
UHGV-0150489_7	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0150489_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0150489_8	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0150489_8	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0150489_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0150489_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0150489_8	COG	COG4926	Phage-related protein	NA
UHGV-0150489_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0150489_9	PHROG	phrog_2310	NA	unknown function
UHGV-0150489_9	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0150489_11	PHROG	phrog_3639	minor tail protein	tail
UHGV-0150489_11	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-0150489_11	eggNOG-mapper	1340434.AXVA01000005_gene4869	Periplasmic copper-binding protein (NosD)	NA
UHGV-0150489_11	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0150489_11	COG	COG5434	Polygalacturonase	NA
UHGV-0150489_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0150489_12	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0150489_12	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0150489_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0150489_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0150489_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0150489_13	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0150489_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0150489_13	UniRef90	UniRef90_A0A417QIC1	Phage tail tape measure protein	NA
UHGV-0150489_13	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0150489_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0150489_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0150489_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0150489_16	eggNOG-mapper	1034347.CAHJ01000045_gene556	NA	NA
UHGV-0150489_16	Structural annotation	PF11836	NA	NA
UHGV-0150489_18	PHROG	phrog_88	major tail protein	tail
UHGV-0150489_18	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0150489_18	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0150489_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0150489_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0150489_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0150489_19	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0150489_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0150489_19	Structural annotation	TIGR01725	NA	NA
UHGV-0150489_20	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0150489_20	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0150489_21	PHROG	phrog_19734	NA	unknown function
UHGV-0150489_21	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0150489_21	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0150489_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0150489_22	PHROG	phrog_749	NA	unknown function
UHGV-0150489_22	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0150489_22	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0150489_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0150489_23	UniRef90	UniRef90_A0A1Y4BVI1	Phage major capsid protein	NA
UHGV-0150489_23	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0150489_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0150489_23	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0150489_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0150489_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0150489_23	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0150489_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0150489_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0150489_24	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0150489_24	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0150489_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0150489_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0150489_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0150489_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0150489_25	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0150489_25	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0150489_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0150489_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0150489_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0150489_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0150489_26	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0150489_26	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0150489_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0150489_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0150489_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0150489_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0150489_27	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0150489_27	eggNOG-mapper	1415774.U728_1256	NA	NA
UHGV-0150489_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0150489_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0150489_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150489_28	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0150489_28	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0150489_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0150489_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0150489_31	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0150489_31	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0150489_31	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0150489_31	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0150489_31	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0150489_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0150489_32	UniRef90	UniRef90_A0A396PTA3	NA	NA
UHGV-0150489_32	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0150489_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0150489_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0150489_33	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0150489_33	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0150489_34	Structural annotation	NF007260	NA	NA
UHGV-0150489_35	PHROG	phrog_7711	NA	unknown function
UHGV-0150489_35	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0150489_35	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0150489_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0150489_37	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0150489_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0150489_37	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0150489_38	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0150489_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0150489_41	UniRef90	UniRef90_A0A847VZF6	NA	NA
UHGV-0150489_41	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0150489_41	Pfam	PF06048	NA	DUF927
UHGV-0150489_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0150489_41	COG	COG5519	NA	NA
UHGV-0150489_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0150489_42	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0150489_42	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0150489_42	eggNOG-mapper	861454.HMPREF9099_00350	ERCC4 domain	NA
UHGV-0150489_42	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0150489_42	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0150489_43	PHROG	phrog_18107	NA	unknown function
UHGV-0150489_43	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0150489_43	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0150489_43	Structural annotation	PF05037	NA	NA
UHGV-0150489_44	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0150489_44	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0150489_44	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0150489_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0150489_49	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-0150489_49	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0150489_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0150489_49	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0150489_50	PHROG	phrog_5079	NA	unknown function
UHGV-0150489_50	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0150489_51	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0150489_52	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0150489_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150489_52	UniRef90	UniRef90_UPI001EED9016	helix-turn-helix transcriptional regulator	NA
UHGV-0150489_52	eggNOG-mapper	1168034.FH5T_02945	DNA-binding helix-turn-helix protein	NA
UHGV-0150489_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0150489_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150489_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0150489_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0150489_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0150489_53	UniRef90	UniRef90_UPI0019D07354	helix-turn-helix transcriptional regulator	NA
UHGV-0150489_53	eggNOG-mapper	398512.JQKC01000033_gene5012	Helix-turn-helix	NA
UHGV-0150489_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150489_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0150489_54	PHROG	phrog_87	metallo-protease	other
UHGV-0150489_54	UniRef90	UniRef90_UPI00189DC221	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0150489_54	eggNOG-mapper	457421.CBFG_03224	NA	NA
UHGV-0150489_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0150489_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0150489_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0150489_55	PHROG	phrog_17982	NA	unknown function
UHGV-0150489_55	UniRef90	UniRef90_A0A0X1U7N9	NA	NA
UHGV-0150489_55	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0150489_55	Pfam	PF14020	NA	DUF4236
UHGV-0150489_55	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0150489_55	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0150489_56	KOfam	K14059	int; integrase	NA
UHGV-0150489_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0150489_56	UniRef90	UniRef90_A0A352UQ74	Site-specific integrase	NA
UHGV-0150489_56	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0150489_56	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0150489_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0150489_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0150489_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0150489_56	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA