UHGV-0150546

Genome information

Genome length 38,096 bps

CDS count 49

Completeness 95.19% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150546
vOTU ID	vOTU-062956
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_397621
BioSample	SAMN05065759
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.87
Jumbo phage	No

Genome content
Genome length	38,096 bps
GC content	42.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.67%
Average CDS length	724.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150546_1	PHROG	phrog_87	metallo-protease	other
UHGV-0150546_1	UniRef90	UniRef90_A0A845KIX0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0150546_1	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0150546_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0150546_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0150546_1	Structural annotation	PF06114	NA	NA
UHGV-0150546_2	PHROG	phrog_10934	NA	unknown function
UHGV-0150546_2	eggNOG-mapper	1139219.I569_00052	NA	NA
UHGV-0150546_3	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0150546_3	UniRef90	UniRef90_A0A1Y3T5U1	NA	NA
UHGV-0150546_3	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0150546_3	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0150546_4	PHROG	phrog_5783	NA	unknown function
UHGV-0150546_4	UniRef90	UniRef90_UPI0011113D11	NYN domain-containing protein	NA
UHGV-0150546_4	eggNOG-mapper	796942.HMPREF9623_01145	NYN domain	NA
UHGV-0150546_4	Pfam	PF01936	NYN domain	NYN
UHGV-0150546_4	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0150546_4	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0150546_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0150546_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0150546_5	UniRef90	UniRef90_A0A6L9H5B9	Recombinase family protein (Fragment)	NA
UHGV-0150546_5	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0150546_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0150546_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0150546_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0150546_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0150546_6	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-0150546_6	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0150546_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0150546_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0150546_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0150546_6	Structural annotation	PF07508, PF14282, NF041201	NA	NA
UHGV-0150546_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0150546_7	PHROG	phrog_2742	endolysin	lysis
UHGV-0150546_7	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-0150546_7	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0150546_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0150546_7	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0150546_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0150546_7	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-0150546_8	PHROG	phrog_1129	holin	lysis
UHGV-0150546_8	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0150546_8	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0150546_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0150546_8	Structural annotation	PF06946	NA	NA
UHGV-0150546_9	PHROG	phrog_1009	NA	unknown function
UHGV-0150546_9	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0150546_9	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0150546_11	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0150546_11	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0150546_11	UniRef90	UniRef90_A0A173RE19	Phage minor structural protein, N-terminal region	NA
UHGV-0150546_11	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-0150546_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0150546_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0150546_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0150546_11	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0150546_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0150546_12	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0150546_12	UniRef90	UniRef90_A0A173RD59	Phage-related protein	NA
UHGV-0150546_12	eggNOG-mapper	556261.HMPREF0240_01280	Phage tail protein	NA
UHGV-0150546_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0150546_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0150546_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0150546_12	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0150546_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0150546_13	PHROG	phrog_19074	NA	unknown function
UHGV-0150546_13	UniRef90	UniRef90_A0A173RDD3	Phage-related protein	NA
UHGV-0150546_13	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0150546_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0150546_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0150546_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0150546_13	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0150546_14	PHROG	phrog_706	NA	unknown function
UHGV-0150546_14	UniRef90	UniRef90_A0A173RDK1	Bacteriophage Gp15 protein	NA
UHGV-0150546_14	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0150546_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0150546_14	Structural annotation	PF06854	NA	NA
UHGV-0150546_15	PHROG	phrog_4450	NA	unknown function
UHGV-0150546_15	UniRef90	UniRef90_A0A7X3SKC0	AP endonuclease	NA
UHGV-0150546_15	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0150546_15	Pfam	PF20378	NA	DUF6673
UHGV-0150546_15	Structural annotation	PF20378	NA	NA
UHGV-0150546_16	PHROG	phrog_820	major tail protein	tail
UHGV-0150546_16	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0150546_16	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0150546_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0150546_17	PHROG	phrog_3266	tail completion	connector
UHGV-0150546_17	Structural annotation	PF12691	NA	NA
UHGV-0150546_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0150546_18	UniRef90	UniRef90_UPI001E609FF9	minor capsid protein	NA
UHGV-0150546_18	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0150546_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0150546_18	Structural annotation	PF11114	NA	NA
UHGV-0150546_19	PHROG	phrog_3366	NA	unknown function
UHGV-0150546_19	eggNOG-mapper	999411.HMPREF1092_03319	NA	NA
UHGV-0150546_19	Pfam	PF20536	NA	DUF6751
UHGV-0150546_19	Structural annotation	PF20536	NA	NA
UHGV-0150546_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0150546_20	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0150546_21	PHROG	phrog_283	major head protein	head and packaging
UHGV-0150546_21	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0150546_21	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0150546_21	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0150546_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0150546_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0150546_22	UniRef90	UniRef90_A0A173RCF7	Phage minor structural protein GP20	NA
UHGV-0150546_22	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-0150546_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0150546_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0150546_24	UniRef90	UniRef90_A0A173RCB2	Phage minor capsid protein 2	NA
UHGV-0150546_24	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0150546_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0150546_24	COG	COG2369	NA	NA
UHGV-0150546_24	Structural annotation	PF06152	NA	NA
UHGV-0150546_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0150546_25	UniRef90	UniRef90_A0A173RC48	Phage portal protein, putative, A118 family	NA
UHGV-0150546_25	eggNOG-mapper	411461.DORFOR_01163	NA	NA
UHGV-0150546_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0150546_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0150546_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0150546_26	UniRef90	UniRef90_B0G4H5	Phage terminase, large subunit, PBSX family	NA
UHGV-0150546_26	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0150546_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0150546_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0150546_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0150546_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0150546_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0150546_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0150546_26	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0150546_27	PHROG	phrog_11237	NA	unknown function
UHGV-0150546_27	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0150546_28	PHROG	phrog_6568	NA	unknown function
UHGV-0150546_33	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0150546_36	PHROG	phrog_7566	NA	unknown function
UHGV-0150546_36	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0150546_37	PHROG	phrog_15077	NA	unknown function
UHGV-0150546_37	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0150546_37	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0150546_37	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0150546_38	PHROG	phrog_8470	NA	unknown function
UHGV-0150546_38	UniRef90	UniRef90_UPI001D0719D3	PcfJ domain-containing protein	NA
UHGV-0150546_38	eggNOG-mapper	457412.RSAG_01172	PcfJ-like protein	NA
UHGV-0150546_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0150546_38	Structural annotation	PF14284	NA	NA
UHGV-0150546_39	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0150546_39	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0150546_39	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0150546_40	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0150546_40	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0150546_40	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-0150546_40	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0150546_40	Pfam	PF00075	RNase H	RNase_H
UHGV-0150546_40	COG	COG0328	Ribonuclease HI	NA
UHGV-0150546_40	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0150546_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150546_42	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0150546_42	Structural annotation	PF01446	NA	NA
UHGV-0150546_45	eggNOG-mapper	497964.CfE428DRAFT_3833	NA	NA
UHGV-0150546_45	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0150546_47	UniRef90	UniRef90_UPI0011115B61	helix-turn-helix domain-containing protein	NA
UHGV-0150546_47	eggNOG-mapper	1280692.AUJL01000011_gene3217	NA	NA
UHGV-0150546_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150546_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0150546_48	UniRef90	UniRef90_UPI00156F9E81	XRE family transcriptional regulator	NA
UHGV-0150546_48	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0150546_48	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0150546_48	Structural annotation	PF05339, NF041951, COG1396	NA	NA