UHGV-0150909

Genome information

Genome length 44,922 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150909
vOTU ID	vOTU-046147
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399452
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.14
Jumbo phage	No

Genome content
Genome length	44,922 bps
GC content	54.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	89.82%
Average CDS length	589.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150909_1	KOfam	K14059	int; integrase	NA
UHGV-0150909_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0150909_1	UniRef90	UniRef90_A0A417HS27	Site-specific integrase	NA
UHGV-0150909_1	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0150909_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0150909_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0150909_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0150909_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0150909_2	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0150909_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0150909_3	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0150909_3	UniRef90	UniRef90_UPI000466CBED	phage antirepressor KilAC domain-containing protein	NA
UHGV-0150909_3	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0150909_3	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0150909_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0150909_3	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0150909_3	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0150909_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0150909_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150909_6	UniRef90	UniRef90_A0A417H7V1	XRE family transcriptional regulator	NA
UHGV-0150909_6	eggNOG-mapper	742740.HMPREF9474_04360	Pou domain - N-terminal to homeobox domain	NA
UHGV-0150909_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0150909_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150909_6	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0150909_6	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0150909_7	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0150909_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0150909_10	Structural annotation	COG3311	NA	NA
UHGV-0150909_13	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0150909_13	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0150909_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0150909_16	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0150909_16	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0150909_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0150909_16	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0150909_17	PHROG	phrog_14970	NA	unknown function
UHGV-0150909_17	UniRef90	UniRef90_UPI00046EF232	Rad52/Rad22 family DNA repair protein	NA
UHGV-0150909_17	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0150909_17	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0150909_17	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0150909_17	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0150909_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0150909_18	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0150909_18	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0150909_18	Structural annotation	PF05772	NA	NA
UHGV-0150909_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0150909_20	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150909_20	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0150909_20	eggNOG-mapper	485913.Krac_10767	endonuclease activity	NA
UHGV-0150909_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0150909_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0150909_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0150909_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0150909_21	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0150909_21	eggNOG-mapper	1203606.HMPREF1526_02270	Single-stranded DNA-binding protein	NA
UHGV-0150909_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0150909_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0150909_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0150909_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0150909_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0150909_22	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0150909_22	UniRef90	UniRef90_A0A2A6ZGI2	HTH gntR-type domain-containing protein	NA
UHGV-0150909_22	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0150909_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0150909_22	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0150909_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0150909_24	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0150909_24	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0150909_24	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0150909_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0150909_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0150909_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0150909_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0150909_25	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0150909_25	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0150909_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0150909_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0150909_25	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0150909_26	PHROG	phrog_3136	NA	unknown function
UHGV-0150909_26	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0150909_26	Pfam	PF04266	ASCH domain	ASCH
UHGV-0150909_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0150909_26	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0150909_27	PHROG	phrog_9958	NA	unknown function
UHGV-0150909_27	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0150909_27	Structural annotation	PF19789	NA	NA
UHGV-0150909_28	PHROG	phrog_22543	NA	unknown function
UHGV-0150909_28	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0150909_29	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0150909_30	PHROG	phrog_16244	NA	unknown function
UHGV-0150909_31	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0150909_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0150909_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0150909_31	Structural annotation	TIGR03655	NA	NA
UHGV-0150909_33	PHROG	phrog_474	phosphofructokinase	other
UHGV-0150909_33	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0150909_33	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0150909_33	Pfam	PF19905	NA	DUF6378
UHGV-0150909_33	Structural annotation	PF19905	NA	NA
UHGV-0150909_34	PHROG	phrog_419	NA	unknown function
UHGV-0150909_34	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0150909_34	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0150909_34	Structural annotation	PF14083	NA	NA
UHGV-0150909_36	PHROG	phrog_774	NA	unknown function
UHGV-0150909_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0150909_38	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0150909_38	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0150909_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0150909_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0150909_39	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0150909_42	Structural annotation	PF17917	NA	NA
UHGV-0150909_43	PHROG	phrog_15863	NA	unknown function
UHGV-0150909_43	UniRef90	UniRef90_A0A417HVZ9	J domain-containing protein	NA
UHGV-0150909_43	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0150909_43	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0150909_43	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0150909_44	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0150909_44	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0150909_44	Structural annotation	PF10723	NA	NA
UHGV-0150909_45	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0150909_45	UniRef90	UniRef90_A0A3E2XYK7	Terminase small subunit	NA
UHGV-0150909_45	eggNOG-mapper	1123405.AUMM01000017_gene2713	Terminase, small subunit	NA
UHGV-0150909_45	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0150909_45	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0150909_45	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0150909_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0150909_46	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0150909_46	UniRef90	UniRef90_A0A318KRY5	Terminase family protein	NA
UHGV-0150909_46	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0150909_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0150909_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0150909_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0150909_47	PHROG	phrog_156	portal protein	head and packaging
UHGV-0150909_47	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0150909_47	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0150909_50	PHROG	phrog_35275	NA	unknown function
UHGV-0150909_50	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0150909_51	PHROG	phrog_24113	NA	unknown function
UHGV-0150909_51	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0150909_51	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0150909_52	PHROG	phrog_371	major head protein	head and packaging
UHGV-0150909_52	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0150909_52	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0150909_52	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0150909_53	PHROG	phrog_13046	NA	unknown function
UHGV-0150909_53	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0150909_53	Structural annotation	PF20387	NA	NA
UHGV-0150909_54	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0150909_54	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0150909_54	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0150909_55	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0150909_55	PHROG	phrog_819	tail protein	tail
UHGV-0150909_55	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0150909_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0150909_55	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0150909_56	PHROG	phrog_24451	NA	unknown function
UHGV-0150909_56	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0150909_57	PHROG	phrog_1382	NA	unknown function
UHGV-0150909_57	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-0150909_59	PHROG	phrog_199	holin	lysis
UHGV-0150909_59	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-0150909_59	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-0150909_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0150909_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0150909_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0150909_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0150909_60	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0150909_60	PHROG	phrog_670	endolysin	lysis
UHGV-0150909_60	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0150909_60	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0150909_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0150909_60	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0150909_60	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0150909_61	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0150909_61	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0150909_61	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0150909_63	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0150909_64	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0150909_65	PHROG	phrog_16490	NA	unknown function
UHGV-0150909_65	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0150909_66	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0150909_67	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0150909_67	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0150909_69	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0150909_69	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0150909_69	UniRef90	UniRef90_A0A845MXW8	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0150909_69	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0150909_69	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0150909_69	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA