UHGV-0150928

Genome information

Genome length 36,048 bps

CDS count 57

Completeness 96.78% (high-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150928
vOTU ID	vOTU-074822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_441303
BioSample	SAMN05971546
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.13
Jumbo phage	No

Genome content
Genome length	36,048 bps
GC content	41.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.81%
Average CDS length	589.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150928_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0150928_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0150928_1	UniRef90	UniRef90_U2RFE5	Resolvase protein	NA
UHGV-0150928_1	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0150928_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0150928_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0150928_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0150928_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0150928_2	PHROG	phrog_5783	NA	unknown function
UHGV-0150928_2	UniRef90	UniRef90_A0A0M6WJD5	NYN domain-containing protein	NA
UHGV-0150928_2	eggNOG-mapper	864563.HMPREF9166_1292	NYN domain	NA
UHGV-0150928_2	Pfam	PF01936	NYN domain	NYN
UHGV-0150928_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0150928_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0150928_3	PHROG	phrog_7115	NA	unknown function
UHGV-0150928_3	UniRef90	UniRef90_A0A173UN76	PH domain-containing protein	NA
UHGV-0150928_3	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-0150928_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0150928_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0150928_4	PHROG	phrog_87	metallo-protease	other
UHGV-0150928_4	UniRef90	UniRef90_A0A2V1JW48	Membrane protein	NA
UHGV-0150928_4	eggNOG-mapper	1256908.HMPREF0373_00642	Zn peptidase	NA
UHGV-0150928_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0150928_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0150928_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0150928_5	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0150928_5	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0150928_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0150928_6	UniRef90	UniRef90_A0A173UP67	Helix-turn-helix domain	NA
UHGV-0150928_6	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0150928_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0150928_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0150928_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0150928_7	UniRef90	UniRef90_A0A4P9C894	HTH cro/C1-type domain-containing protein	NA
UHGV-0150928_7	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0150928_7	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0150928_10	PHROG	phrog_585	NA	unknown function
UHGV-0150928_10	UniRef90	UniRef90_A0A7G5MSN3	NA	NA
UHGV-0150928_10	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0150928_10	Pfam	PF10711	NA	DUF2513
UHGV-0150928_10	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0150928_13	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0150928_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150928_15	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0150928_15	Structural annotation	PF01446	NA	NA
UHGV-0150928_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0150928_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0150928_16	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-0150928_16	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0150928_16	Pfam	PF00075	RNase H	RNase_H
UHGV-0150928_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0150928_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0150928_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0150928_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0150928_17	UniRef90	UniRef90_A0A844E1P2	Single-stranded DNA-binding protein	NA
UHGV-0150928_17	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0150928_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0150928_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0150928_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0150928_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0150928_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0150928_18	PHROG	phrog_7566	NA	unknown function
UHGV-0150928_18	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0150928_19	Structural annotation	PF05641	NA	NA
UHGV-0150928_21	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0150928_22	PHROG	phrog_8470	NA	unknown function
UHGV-0150928_22	UniRef90	UniRef90_UPI0010204BDF	PcfJ domain-containing protein	NA
UHGV-0150928_22	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0150928_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0150928_22	Structural annotation	PF14284	NA	NA
UHGV-0150928_23	PHROG	phrog_15077	NA	unknown function
UHGV-0150928_23	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0150928_23	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-0150928_23	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0150928_25	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0150928_25	COG	COG1038	Pyruvate carboxylase	NA
UHGV-0150928_26	PHROG	phrog_20593	NA	unknown function
UHGV-0150928_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0150928_28	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0150928_28	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0150928_28	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0150928_29	PHROG	phrog_30856	NA	unknown function
UHGV-0150928_31	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0150928_31	PHROG	phrog_11157	NA	unknown function
UHGV-0150928_31	UniRef90	UniRef90_A0A173UNA5	Bacillopeptidase F	NA
UHGV-0150928_31	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0150928_31	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0150928_31	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0150928_31	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0150928_31	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0150928_32	PHROG	phrog_32322	NA	unknown function
UHGV-0150928_32	UniRef90	UniRef90_A0A844E6Z9	Ig-like_bact domain-containing protein	NA
UHGV-0150928_32	eggNOG-mapper	1256908.HMPREF0373_00675	NA	NA
UHGV-0150928_32	Pfam	PF13754	NA	Big_3_4
UHGV-0150928_32	Structural annotation	PF13754	NA	NA
UHGV-0150928_33	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0150928_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0150928_34	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0150928_34	UniRef90	UniRef90_A0A173ULR4	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0150928_34	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0150928_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0150928_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0150928_34	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0150928_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0150928_35	UniRef90	UniRef90_A0A173UN39	Phage portal protein, putative, A118 family	NA
UHGV-0150928_35	eggNOG-mapper	936154.STP_1601	portal protein	NA
UHGV-0150928_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0150928_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0150928_36	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0150928_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0150928_36	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-0150928_36	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0150928_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0150928_36	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0150928_36	COG	COG2369	NA	NA
UHGV-0150928_36	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0150928_38	eggNOG-mapper	1232666.JANE01000056_gene200	NA	NA
UHGV-0150928_39	PHROG	phrog_3675	NA	unknown function
UHGV-0150928_39	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0150928_39	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0150928_39	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0150928_39	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0150928_40	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0150928_40	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0150928_40	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0150928_40	Pfam	PF14359	NA	DUF4406
UHGV-0150928_40	Structural annotation	PF14359	NA	NA
UHGV-0150928_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0150928_41	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0150928_41	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0150928_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0150928_41	Structural annotation	PF06810	NA	NA
UHGV-0150928_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0150928_42	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0150928_42	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0150928_45	PHROG	phrog_3366	NA	unknown function
UHGV-0150928_45	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0150928_45	Pfam	PF20536	NA	DUF6751
UHGV-0150928_45	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0150928_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0150928_46	UniRef90	UniRef90_A0A6L5YLT4	Capsid protein	NA
UHGV-0150928_46	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0150928_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0150928_46	Structural annotation	PF11114	NA	NA
UHGV-0150928_47	PHROG	phrog_3266	tail completion	connector
UHGV-0150928_47	Structural annotation	PF12691	NA	NA
UHGV-0150928_48	PHROG	phrog_3099	NA	unknown function
UHGV-0150928_48	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0150928_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0150928_49	Structural annotation	PF20378	NA	NA
UHGV-0150928_50	PHROG	phrog_706	NA	unknown function
UHGV-0150928_50	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0150928_50	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0150928_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0150928_50	Structural annotation	PF06854	NA	NA
UHGV-0150928_51	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0150928_51	UniRef90	UniRef90_A0A173RKZ6	Phage-related minor tail protein	NA
UHGV-0150928_51	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0150928_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0150928_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0150928_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0150928_51	Structural annotation	PF10145, MF_04138, TIGR01760	NA	NA
UHGV-0150928_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0150928_52	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0150928_52	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0150928_53	PHROG	phrog_538	minor tail protein	tail
UHGV-0150928_53	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0150928_53	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0150928_53	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0150928_53	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0150928_54	PHROG	phrog_9994	NA	unknown function
UHGV-0150928_54	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0150928_54	Structural annotation	PF20747	NA	NA
UHGV-0150928_55	PHROG	phrog_4105	NA	unknown function
UHGV-0150928_55	eggNOG-mapper	1256908.HMPREF0373_00464	NA	NA
UHGV-0150928_56	PHROG	phrog_1129	holin	lysis
UHGV-0150928_56	UniRef90	UniRef90_U2Q4W5	Holin family protein	NA
UHGV-0150928_56	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0150928_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0150928_56	Structural annotation	PF06946	NA	NA
UHGV-0150928_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0150928_57	PHROG	phrog_3088	amidase	lysis
UHGV-0150928_57	UniRef90	UniRef90_A0A844E740	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0150928_57	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0150928_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0150928_57	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0150928_57	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0150928_57	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA