UHGV-0151219

Genome information

Genome length 35,372 bps

CDS count 48

Completeness 93.47% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151219
vOTU ID	vOTU-010541
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_469496
BioSample	SAMN06111954
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.29
Jumbo phage	No

Genome content
Genome length	35,372 bps
GC content	36.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.73%
Average CDS length	679.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151219_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0151219_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0151219_1	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0151219_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0151219_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0151219_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0151219_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0151219_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0151219_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0151219_2	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0151219_2	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0151219_2	UniRef90	UniRef90_R5AEV9	Cytotoxic translational repressor of toxin-antitoxin stability system	NA
UHGV-0151219_2	eggNOG-mapper	97139.C824_00468	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0151219_2	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0151219_2	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0151219_2	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0151219_3	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-0151219_4	PHROG	phrog_1847	NA	unknown function
UHGV-0151219_4	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-0151219_4	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-0151219_4	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0151219_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0151219_4	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0151219_5	PHROG	phrog_3845	NA	unknown function
UHGV-0151219_5	UniRef90	UniRef90_UPI0019563C69	PH domain-containing protein	NA
UHGV-0151219_5	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0151219_5	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0151219_6	PHROG	phrog_20886	NA	unknown function
UHGV-0151219_6	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0151219_6	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0151219_6	Structural annotation	PF06114	NA	NA
UHGV-0151219_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0151219_7	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0151219_7	UniRef90	UniRef90_A0A3D5LQZ9	XRE family transcriptional regulator	NA
UHGV-0151219_7	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151219_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151219_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151219_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151219_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0151219_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151219_8	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-0151219_8	eggNOG-mapper	1161413.HMPREF1510_1296	Transcriptional regulator	NA
UHGV-0151219_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151219_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151219_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151219_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0151219_15	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0151219_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0151219_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0151219_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0151219_16	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0151219_16	eggNOG-mapper	1519464.HY22_13875	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0151219_16	Pfam	PF00075	RNase H	RNase_H
UHGV-0151219_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0151219_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0151219_17	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0151219_18	PHROG	phrog_8470	NA	unknown function
UHGV-0151219_18	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-0151219_18	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0151219_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0151219_18	Structural annotation	PF14284	NA	NA
UHGV-0151219_19	PHROG	phrog_15077	NA	unknown function
UHGV-0151219_19	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0151219_19	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0151219_19	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0151219_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0151219_20	UniRef90	UniRef90_A0A1C5VVJ6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0151219_20	eggNOG-mapper	1116375.VEJY3_09830	NA	NA
UHGV-0151219_20	Pfam	PF14359	NA	DUF4406
UHGV-0151219_20	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0151219_20	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0151219_21	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0151219_21	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0151219_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151219_22	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0151219_22	Structural annotation	PF02996	NA	NA
UHGV-0151219_23	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0151219_23	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0151219_23	eggNOG-mapper	1139219.I569_01387	Helix-turn-helix of insertion element transposase	NA
UHGV-0151219_23	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0151219_23	Structural annotation	PF13022	NA	NA
UHGV-0151219_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151219_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0151219_24	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0151219_24	eggNOG-mapper	1415775.U729_2599	Phage terminase, large subunit, PBSX family	NA
UHGV-0151219_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0151219_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151219_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0151219_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0151219_25	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0151219_25	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0151219_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0151219_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0151219_26	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0151219_26	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0151219_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0151219_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0151219_26	Structural annotation	PF06152	NA	NA
UHGV-0151219_27	UniRef90	UniRef90_UPI00066D3680	minor capsid protein	NA
UHGV-0151219_27	eggNOG-mapper	1194526.A284_07065	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0151219_27	COG	COG2369	NA	NA
UHGV-0151219_29	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0151219_29	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0151219_29	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0151219_30	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0151219_30	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-0151219_30	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0151219_30	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0151219_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0151219_30	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0151219_30	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0151219_30	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0151219_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0151219_32	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0151219_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-0151219_33	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0151219_33	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0151219_33	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0151219_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0151219_34	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0151219_35	PHROG	phrog_8710	NA	unknown function
UHGV-0151219_35	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0151219_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0151219_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0151219_36	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0151219_36	Structural annotation	PF11114	NA	NA
UHGV-0151219_37	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0151219_37	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0151219_37	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0151219_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0151219_37	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0151219_38	PHROG	phrog_820	major tail protein	tail
UHGV-0151219_38	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0151219_38	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0151219_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0151219_39	PHROG	phrog_8300	NA	unknown function
UHGV-0151219_39	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0151219_39	Structural annotation	PF06896	NA	NA
UHGV-0151219_40	PHROG	phrog_8355	NA	unknown function
UHGV-0151219_40	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0151219_40	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0151219_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0151219_40	Structural annotation	PF06854	NA	NA
UHGV-0151219_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0151219_41	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0151219_41	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0151219_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0151219_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0151219_42	PHROG	phrog_1194	NA	unknown function
UHGV-0151219_42	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0151219_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0151219_43	PHROG	phrog_1401	NA	unknown function
UHGV-0151219_43	Structural annotation	PF07761	NA	NA
UHGV-0151219_44	PHROG	phrog_6616	tail protein	tail
UHGV-0151219_44	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0151219_44	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0151219_44	COG	COG4926	Phage-related protein	NA
UHGV-0151219_44	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0151219_48	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0151219_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0151219_48	UniRef90	UniRef90_A0A6G5YKB8	Integrase	NA
UHGV-0151219_48	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0151219_48	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0151219_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151219_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0151219_48	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA