UHGV-0151233

Genome information

Genome length 27,611 bps

CDS count 44

Completeness 93.02% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151233
vOTU ID	vOTU-073871
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_498006
BioSample	SAMN06110155
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.2
Jumbo phage	No

Genome content
Genome length	27,611 bps
GC content	40.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.21%
Average CDS length	584.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151233_1	UniRef90	UniRef90_A0A355TYD9	Transcriptional regulator	NA
UHGV-0151233_1	eggNOG-mapper	428125.CLOLEP_02009	sequence-specific DNA binding	NA
UHGV-0151233_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151233_1	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0151233_2	PHROG	phrog_12156	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0151233_2	UniRef90	UniRef90_R5DNY7	Divergent AAA domain protein	NA
UHGV-0151233_2	eggNOG-mapper	1384065.JAGS01000001_gene3244	Putative DNA-binding domain	NA
UHGV-0151233_2	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-0151233_2	Pfam	PF13749	Putative ATP-dependent DNA helicase recG C-terminal	HATPase_c_4
UHGV-0151233_2	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0151233_2	Structural annotation	PF04703, MF_01819, NF033788, NF033091, COG2865	NA	NA
UHGV-0151233_3	KOfam	K14059	int; integrase	NA
UHGV-0151233_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0151233_3	UniRef90	UniRef90_UPI0008345DF0	tyrosine-type recombinase/integrase	NA
UHGV-0151233_3	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0151233_3	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0151233_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151233_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151233_3	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0151233_4	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0151233_5	PHROG	phrog_1914	NA	unknown function
UHGV-0151233_5	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0151233_5	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0151233_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0151233_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0151233_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0151233_6	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0151233_6	eggNOG-mapper	1392501.JIAC01000001_gene589	sequence-specific DNA binding	NA
UHGV-0151233_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151233_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151233_6	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0151233_7	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0151233_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151233_7	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0151233_11	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0151233_11	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0151233_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0151233_11	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0151233_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151233_15	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0151233_15	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0151233_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0151233_16	PHROG	phrog_18107	NA	unknown function
UHGV-0151233_16	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0151233_16	Structural annotation	PF05037	NA	NA
UHGV-0151233_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0151233_17	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0151233_17	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0151233_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0151233_17	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0151233_17	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0151233_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0151233_18	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0151233_18	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0151233_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0151233_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0151233_19	UniRef90	UniRef90_A0A1C6JHY9	DNA helicase	NA
UHGV-0151233_19	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-0151233_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0151233_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0151233_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0151233_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0151233_21	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0151233_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0151233_23	Structural annotation	PF13211	NA	NA
UHGV-0151233_27	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0151233_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151233_27	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0151233_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151233_28	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0151233_28	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0151233_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151233_29	PHROG	phrog_1066	NA	unknown function
UHGV-0151233_29	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0151233_29	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0151233_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0151233_30	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0151233_30	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0151233_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0151233_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0151233_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0151233_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0151233_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0151233_31	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0151233_31	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0151233_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0151233_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0151233_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0151233_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0151233_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0151233_32	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0151233_32	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0151233_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0151233_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0151233_32	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0151233_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0151233_33	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0151233_33	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0151233_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0151233_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0151233_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0151233_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0151233_34	PHROG	phrog_5223	neck protein	connector
UHGV-0151233_34	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0151233_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0151233_34	Structural annotation	TIGR01560	NA	NA
UHGV-0151233_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0151233_35	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0151233_35	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0151233_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0151233_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0151233_36	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0151233_36	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0151233_36	Structural annotation	TIGR01725	NA	NA
UHGV-0151233_37	Structural annotation	PF12691	NA	NA
UHGV-0151233_38	PHROG	phrog_885	major tail protein	tail
UHGV-0151233_38	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0151233_38	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0151233_38	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0151233_39	PHROG	phrog_1021	NA	unknown function
UHGV-0151233_41	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0151233_41	eggNOG-mapper	457396.CSBG_01057	tape measure	NA
UHGV-0151233_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0151233_41	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0151233_42	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0151233_42	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0151233_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0151233_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0151233_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0151233_43	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0151233_43	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0151233_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0151233_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0151233_43	COG	COG4926	Phage-related protein	NA
UHGV-0151233_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0151233_44	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0151233_44	Pfam	PF10651	BppU N-terminal domain	BppU_N