UHGV-0151235

Genome information

vOTU vOTU-019492

Genome length 39,294 bps

CDS count 61

Completeness 60.80% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151235
vOTU ID	vOTU-019492
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_472276
BioSample	SAMN06112018
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.11
Jumbo phage	No

Genome content
Genome length	39,294 bps
GC content	46.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	94.28%
Average CDS length	610.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151235_1	PHROG	phrog_38044	NA	unknown function
UHGV-0151235_1	UniRef90	UniRef90_F3QSN1	Carbohydrate binding domain protein	NA
UHGV-0151235_1	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0151235_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0151235_2	PHROG	phrog_29137	NA	unknown function
UHGV-0151235_2	UniRef90	UniRef90_F3QSN2	Conserved domain protein	NA
UHGV-0151235_3	PHROG	phrog_20732	NA	unknown function
UHGV-0151235_3	UniRef90	UniRef90_UPI0019142871	phage holin family protein	NA
UHGV-0151235_3	eggNOG-mapper	762982.HMPREF9442_01193	NA	NA
UHGV-0151235_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0151235_4	PHROG	phrog_28004	NA	unknown function
UHGV-0151235_4	UniRef90	UniRef90_F3QSN4	Conserved domain protein	NA
UHGV-0151235_4	eggNOG-mapper	762982.HMPREF9442_01194	NA	NA
UHGV-0151235_4	Structural annotation	PF01105, NF038393	NA	NA
UHGV-0151235_5	PHROG	phrog_36764	NA	unknown function
UHGV-0151235_5	UniRef90	UniRef90_F3QSN5	Conserved domain protein	NA
UHGV-0151235_6	UniRef90	UniRef90_F3QSN6	Conserved domain protein	NA
UHGV-0151235_7	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0151235_7	PHROG	phrog_7	endolysin	lysis
UHGV-0151235_7	UniRef90	UniRef90_G5SMI5	Lysozyme	NA
UHGV-0151235_7	eggNOG-mapper	762982.HMPREF9442_01197	lysozyme	NA
UHGV-0151235_7	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0151235_7	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0151235_7	HAMAP	MF_04110	Endolysin	NA
UHGV-0151235_7	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0151235_8	UniRef90	UniRef90_UPI001F238197	STAS-like domain-containing protein	NA
UHGV-0151235_9	PHROG	phrog_35356	NA	unknown function
UHGV-0151235_9	UniRef90	UniRef90_UPI000C0426E1	histidine kinase	NA
UHGV-0151235_9	eggNOG-mapper	762968.HMPREF9441_00557	NA	NA
UHGV-0151235_10	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0151235_10	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0151235_11	PHROG	phrog_16490	NA	unknown function
UHGV-0151235_11	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0151235_11	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-0151235_12	PHROG	phrog_31654	NA	unknown function
UHGV-0151235_12	eggNOG-mapper	762982.HMPREF9442_01202	NA	NA
UHGV-0151235_13	PHROG	phrog_28898	NA	unknown function
UHGV-0151235_13	UniRef90	UniRef90_F3QSP3	Conserved domain protein	NA
UHGV-0151235_13	eggNOG-mapper	762982.HMPREF9442_01203	NA	NA
UHGV-0151235_13	Structural annotation	PF10781	NA	NA
UHGV-0151235_14	PHROG	phrog_34053	NA	unknown function
UHGV-0151235_15	PHROG	phrog_38431	NA	unknown function
UHGV-0151235_15	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0151235_15	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0151235_16	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0151235_16	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0151235_17	PHROG	phrog_35041	NA	unknown function
UHGV-0151235_18	eggNOG-mapper	762982.HMPREF9442_01208	NA	NA
UHGV-0151235_20	PHROG	phrog_35741	NA	unknown function
UHGV-0151235_20	eggNOG-mapper	762982.HMPREF9442_01210	NA	NA
UHGV-0151235_21	UniRef90	UniRef90_A0A3E5G5W7	Pilus assembly protein HicB	NA
UHGV-0151235_21	eggNOG-mapper	264731.PRU_1050	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0151235_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0151235_21	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0151235_22	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0151235_22	UniRef90	UniRef90_UPI001032AD35	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0151235_22	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0151235_22	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0151235_22	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0151235_23	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0151235_23	UniRef90	UniRef90_F3QSQ4	Conserved domain protein	NA
UHGV-0151235_23	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0151235_23	Pfam	PF14359	NA	DUF4406
UHGV-0151235_23	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0151235_25	PHROG	phrog_874	NA	unknown function
UHGV-0151235_25	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0151235_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0151235_26	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0151235_26	UniRef90	UniRef90_F3QSQ5	Conserved domain protein	NA
UHGV-0151235_26	eggNOG-mapper	762982.HMPREF9442_01215	NA	NA
UHGV-0151235_26	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0151235_28	PHROG	phrog_8684	NA	unknown function
UHGV-0151235_28	UniRef90	UniRef90_UPI0011DD9A50	YopX family protein	NA
UHGV-0151235_28	eggNOG-mapper	619693.HMPREF6745_2499	YopX protein	NA
UHGV-0151235_28	Pfam	PF09643	YopX protein	YopX
UHGV-0151235_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0151235_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0151235_30	PHROG	phrog_32914	NA	unknown function
UHGV-0151235_31	eggNOG-mapper	497964.CfE428DRAFT_3833	NA	NA
UHGV-0151235_31	Structural annotation	PF04450, COG3975	NA	NA
UHGV-0151235_33	PHROG	phrog_12005	NA	unknown function
UHGV-0151235_34	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0151235_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0151235_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0151235_35	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0151235_35	UniRef90	UniRef90_UPI001E440F21	site-specific DNA-methyltransferase	NA
UHGV-0151235_35	eggNOG-mapper	411154.GFO_2469	DNA methylase	NA
UHGV-0151235_35	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0151235_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0151235_35	COG	COG0863	DNA modification methylase	NA
UHGV-0151235_35	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0151235_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0151235_36	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0151235_36	UniRef90	UniRef90_UPI001032D105	DNA cytosine methyltransferase	NA
UHGV-0151235_36	eggNOG-mapper	762982.HMPREF9442_01223	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0151235_36	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0151235_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0151235_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0151235_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0151235_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0151235_37	PHROG	phrog_7964	NA	unknown function
UHGV-0151235_37	UniRef90	UniRef90_UPI001032F014	polymer-forming cytoskeletal protein	NA
UHGV-0151235_37	eggNOG-mapper	762982.HMPREF9442_00534	NA	NA
UHGV-0151235_37	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0151235_37	Structural annotation	NF040481	NA	NA
UHGV-0151235_38	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-0151235_38	eggNOG-mapper	762968.HMPREF9441_00538	NA	NA
UHGV-0151235_40	UniRef90	UniRef90_F3PDU6	Conserved domain protein	NA
UHGV-0151235_40	eggNOG-mapper	1268240.ATFI01000008_gene2559	NA	NA
UHGV-0151235_40	Pfam	PF20338	NA	DUF6633
UHGV-0151235_40	Structural annotation	PF20338	NA	NA
UHGV-0151235_41	PHROG	phrog_16304	NA	unknown function
UHGV-0151235_41	UniRef90	UniRef90_G5SMF9	NA	NA
UHGV-0151235_41	eggNOG-mapper	762968.HMPREF9441_00534	NA	NA
UHGV-0151235_41	Pfam	PF19808	NA	DUF6291
UHGV-0151235_41	Structural annotation	PF19808	NA	NA
UHGV-0151235_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0151235_42	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151235_42	UniRef90	UniRef90_G5SMF8	HNH endonuclease domain protein	NA
UHGV-0151235_42	eggNOG-mapper	762968.HMPREF9441_00533	HNH endonuclease	NA
UHGV-0151235_42	Pfam	PF19808	NA	DUF6291
UHGV-0151235_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0151235_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151235_43	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0151235_43	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0151235_43	UniRef90	UniRef90_UPI001032CED9	DEAD/DEAH box helicase	NA
UHGV-0151235_43	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0151235_43	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0151235_43	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0151235_43	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0151235_43	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0151235_43	Structural annotation	PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0151235_45	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151235_45	UniRef90	UniRef90_A0A173Z6F3	Bacteriophage Lambda NinG protein	NA
UHGV-0151235_45	eggNOG-mapper	762968.HMPREF9441_03237	NA	NA
UHGV-0151235_45	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0151235_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151235_45	Structural annotation	PF05766	NA	NA
UHGV-0151235_46	AcrCatalog	cluster_25385	NA	NA
UHGV-0151235_48	PHROG	phrog_1934	NA	unknown function
UHGV-0151235_48	UniRef90	UniRef90_UPI0003030191	zinc-finger-containing protein	NA
UHGV-0151235_48	eggNOG-mapper	762982.HMPREF9442_00544	zinc-finger-containing domain	NA
UHGV-0151235_48	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0151235_48	Structural annotation	PF11672	NA	NA
UHGV-0151235_50	PHROG	phrog_200	lipoprotein	other
UHGV-0151235_50	UniRef90	UniRef90_A0A016AEX9	SPFH domain / Band 7 family protein	NA
UHGV-0151235_50	eggNOG-mapper	742727.HMPREF9447_04889	SPFH Band 7 PHB domain protein	NA
UHGV-0151235_50	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0151235_50	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0151235_52	PHROG	phrog_11501	NA	unknown function
UHGV-0151235_52	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-0151235_52	eggNOG-mapper	762982.HMPREF9442_00546	NA	NA
UHGV-0151235_52	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0151235_53	PHROG	phrog_12688	NA	unknown function
UHGV-0151235_53	eggNOG-mapper	762982.HMPREF9442_00547	NA	NA
UHGV-0151235_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0151235_54	eggNOG-mapper	762982.HMPREF9442_00548	NA	NA
UHGV-0151235_54	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0151235_55	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0151235_55	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0151235_56	PHROG	phrog_6244	NA	unknown function
UHGV-0151235_56	UniRef90	UniRef90_A6L492	PDDEXK_1 domain-containing protein	NA
UHGV-0151235_56	eggNOG-mapper	762982.HMPREF9442_00550	NA	NA
UHGV-0151235_56	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0151235_56	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0151235_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151235_57	UniRef90	UniRef90_F3QQV8	Erf family protein	NA
UHGV-0151235_57	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-0151235_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0151235_57	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0151235_58	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0151235_58	Structural annotation	PF12728, MF_01155, NF040990, COG3311	NA	NA
UHGV-0151235_59	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0151235_59	PHROG	phrog_435	endolysin	lysis
UHGV-0151235_59	UniRef90	UniRef90_R5D107	Family 3 N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0151235_59	eggNOG-mapper	862515.HMPREF0658_0800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0151235_59	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0151235_59	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0151235_60	KOfam	K01633	folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]	NA
UHGV-0151235_60	PHROG	phrog_26344	NA	unknown function
UHGV-0151235_60	UniRef90	UniRef90_R5CRZ8	7,8-dihydroneopterin aldolase	NA
UHGV-0151235_60	eggNOG-mapper	1122978.AUFP01000020_gene2247	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin	NA
UHGV-0151235_60	Pfam	PF02152	Dihydroneopterin aldolase	FolB
UHGV-0151235_60	NCBIFam	TIGR00525.1	dihydroneopterin aldolase	NA
UHGV-0151235_60	COG	COG1539	Dihydroneopterin aldolase	NA
UHGV-0151235_61	KOfam	K00525	E1.17.4.1A, nrdA, nrdE; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]	NA
UHGV-0151235_61	PHROG	phrog_84	ribonucleoside-diphosphate reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0151235_61	UniRef90	UniRef90_R5MAL4	Vitamin B12-dependent ribonucleotide reductase	NA
UHGV-0151235_61	eggNOG-mapper	1203550.HMPREF1475_01974	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	NA
UHGV-0151235_61	Pfam	PF02867	Ribonucleotide reductase, barrel domain	Ribonuc_red_lgC
UHGV-0151235_61	NCBIFam	TIGR02504.1	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA
UHGV-0151235_61	COG	COG0209	Ribonucleotide reductase alpha subunit	NA
UHGV-0151235_61	Structural annotation	PF02867, MF_04026, NF006417, COG0209	NA	NA