UHGV-0151258

Genome information

Genome length 42,365 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151258
vOTU ID	vOTU-009134
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_456475
BioSample	SAMN05971464
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.45
Jumbo phage	No

Genome content
Genome length	42,365 bps
GC content	50.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.09%
Average CDS length	564.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151258_2	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0151258_3	Structural annotation	PF12510	NA	NA
UHGV-0151258_4	PHROG	phrog_20016	NA	unknown function
UHGV-0151258_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0151258_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0151258_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0151258_5	PHROG	phrog_16490	NA	unknown function
UHGV-0151258_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0151258_6	PHROG	phrog_22984	NA	unknown function
UHGV-0151258_7	PHROG	phrog_21718	NA	unknown function
UHGV-0151258_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0151258_8	PHROG	phrog_3754	NA	unknown function
UHGV-0151258_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0151258_9	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0151258_9	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0151258_9	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0151258_10	PHROG	phrog_13256	NA	unknown function
UHGV-0151258_10	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0151258_11	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0151258_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0151258_12	PHROG	phrog_291	endolysin	lysis
UHGV-0151258_12	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0151258_12	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0151258_12	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0151258_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0151258_12	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0151258_12	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0151258_14	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0151258_14	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0151258_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0151258_16	PHROG	phrog_9534	head protein	head and packaging
UHGV-0151258_16	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0151258_16	Structural annotation	PF21567	NA	NA
UHGV-0151258_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0151258_17	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0151258_17	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0151258_17	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0151258_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0151258_18	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0151258_18	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0151258_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0151258_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0151258_19	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0151258_19	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0151258_19	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0151258_19	COG	COG5412	Phage-related protein	NA
UHGV-0151258_19	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0151258_20	PHROG	phrog_20920	NA	unknown function
UHGV-0151258_20	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0151258_20	Structural annotation	PF16674	NA	NA
UHGV-0151258_22	PHROG	phrog_18646	NA	unknown function
UHGV-0151258_23	PHROG	phrog_885	major tail protein	tail
UHGV-0151258_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0151258_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0151258_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0151258_24	Structural annotation	PF11367	NA	NA
UHGV-0151258_25	PHROG	phrog_17977	NA	unknown function
UHGV-0151258_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0151258_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0151258_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0151258_27	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0151258_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0151258_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0151258_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0151258_28	Structural annotation	PF06810	NA	NA
UHGV-0151258_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0151258_29	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0151258_29	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0151258_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0151258_29	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0151258_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0151258_30	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0151258_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0151258_31	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0151258_31	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0151258_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0151258_31	COG	COG2369	NA	NA
UHGV-0151258_31	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0151258_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0151258_33	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0151258_33	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0151258_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151258_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0151258_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151258_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0151258_34	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0151258_34	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0151258_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0151258_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0151258_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0151258_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151258_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0151258_36	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0151258_36	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0151258_36	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0151258_36	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0151258_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0151258_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0151258_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0151258_36	COG	COG0863	DNA modification methylase	NA
UHGV-0151258_36	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0151258_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151258_38	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0151258_38	Pfam	PF07374	NA	DUF1492
UHGV-0151258_38	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0151258_38	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0151258_40	PHROG	phrog_924	NA	unknown function
UHGV-0151258_40	Pfam	PF04448	NA	DUF551
UHGV-0151258_40	Structural annotation	NF041588	NA	NA
UHGV-0151258_41	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151258_41	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0151258_41	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0151258_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0151258_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151258_41	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0151258_42	PHROG	phrog_9958	NA	unknown function
UHGV-0151258_42	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0151258_42	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0151258_42	Structural annotation	PF19789	NA	NA
UHGV-0151258_48	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0151258_48	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0151258_48	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0151258_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0151258_48	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0151258_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0151258_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0151258_50	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0151258_50	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0151258_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0151258_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0151258_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0151258_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0151258_50	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0151258_51	PHROG	phrog_9804	NA	unknown function
UHGV-0151258_52	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0151258_52	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0151258_52	eggNOG-mapper	749413.E5DV82_9VIRU	calcium ion binding	NA
UHGV-0151258_52	Pfam	PF19808	NA	DUF6291
UHGV-0151258_52	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0151258_52	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0151258_52	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0151258_53	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0151258_53	UniRef90	UniRef90_A0A329URB3	Lactamase_B domain-containing protein	NA
UHGV-0151258_53	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0151258_53	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0151258_53	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0151258_53	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0151258_54	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0151258_54	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151258_54	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0151258_54	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0151258_54	Pfam	PF03837	RecT family	RecT
UHGV-0151258_54	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0151258_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0151258_54	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0151258_55	PHROG	phrog_674	NA	unknown function
UHGV-0151258_55	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0151258_55	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0151258_55	Pfam	PF07083	NA	DUF1351
UHGV-0151258_55	Structural annotation	PF07083	NA	NA
UHGV-0151258_58	PHROG	phrog_7964	NA	unknown function
UHGV-0151258_58	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0151258_58	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0151258_58	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0151258_58	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0151258_58	Structural annotation	NF040481	NA	NA
UHGV-0151258_60	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0151258_60	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0151258_61	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0151258_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151258_61	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0151258_61	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0151258_62	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0151258_62	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0151258_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151258_63	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0151258_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151258_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151258_64	PHROG	phrog_585	NA	unknown function
UHGV-0151258_64	UniRef90	UniRef90_A0A2G0E8R9	NA	NA
UHGV-0151258_64	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0151258_64	Pfam	PF10711	NA	DUF2513
UHGV-0151258_64	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0151258_66	UniRef90	UniRef90_UPI001F46B012	SAP domain-containing protein	NA
UHGV-0151258_66	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0151258_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151258_68	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151258_69	KOfam	K14059	int; integrase	NA
UHGV-0151258_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0151258_69	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0151258_69	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0151258_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151258_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151258_69	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA