UHGV-0151269

Genome information

Genome length 41,326 bps

CDS count 63

Completeness 71.71% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151269
vOTU ID	vOTU-027478
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_499100
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.83
Jumbo phage	No

Genome content
Genome length	41,326 bps
GC content	49.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.86%
Average CDS length	594.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151269_4	PHROG	phrog_2715	NA	unknown function
UHGV-0151269_4	eggNOG-mapper	718252.FP2_16370	NA	NA
UHGV-0151269_5	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0151269_5	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0151269_5	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0151269_5	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0151269_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0151269_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0151269_8	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0151269_8	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0151269_8	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0151269_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0151269_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0151269_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0151269_8	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0151269_9	PHROG	phrog_28936	NA	unknown function
UHGV-0151269_9	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0151269_9	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0151269_10	PHROG	phrog_18107	NA	unknown function
UHGV-0151269_10	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0151269_10	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0151269_10	Structural annotation	PF05037	NA	NA
UHGV-0151269_11	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151269_11	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0151269_11	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0151269_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0151269_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0151269_13	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0151269_13	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0151269_13	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0151269_13	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0151269_13	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0151269_13	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0151269_14	Structural annotation	PF14143	NA	NA
UHGV-0151269_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151269_15	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0151269_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0151269_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0151269_19	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-0151269_19	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-0151269_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0151269_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0151269_19	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0151269_20	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0151269_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151269_20	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0151269_21	UniRef90	UniRef90_A0A316RBI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0151269_21	eggNOG-mapper	663278.Ethha_0519	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0151269_21	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0151269_21	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0151269_25	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0151269_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151269_25	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151269_26	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0151269_26	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0151269_26	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0151269_26	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0151269_26	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0151269_26	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0151269_26	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0151269_28	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0151269_28	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0151269_28	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0151269_28	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0151269_28	Pfam	PF13614	AAA domain	AAA_31
UHGV-0151269_28	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0151269_28	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0151269_29	Structural annotation	PF07878	NA	NA
UHGV-0151269_30	Structural annotation	PF14166	NA	NA
UHGV-0151269_31	Structural annotation	NF010188	NA	NA
UHGV-0151269_32	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0151269_33	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0151269_34	PHROG	phrog_16490	NA	unknown function
UHGV-0151269_34	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0151269_38	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0151269_40	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0151269_40	Structural annotation	PF10651	NA	NA
UHGV-0151269_41	PHROG	phrog_15303	NA	unknown function
UHGV-0151269_41	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0151269_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0151269_43	PHROG	phrog_291	endolysin	lysis
UHGV-0151269_43	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0151269_43	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0151269_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0151269_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0151269_43	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0151269_44	PHROG	phrog_2310	NA	unknown function
UHGV-0151269_45	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0151269_45	COG	COG5492	NA	NA
UHGV-0151269_46	PHROG	phrog_18725	NA	unknown function
UHGV-0151269_46	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0151269_47	PHROG	phrog_13879	NA	unknown function
UHGV-0151269_47	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0151269_47	Pfam	PF19789	NA	DUF6273
UHGV-0151269_47	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0151269_48	PHROG	phrog_1194	NA	unknown function
UHGV-0151269_48	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0151269_48	Pfam	PF20458	NA	DUF6711
UHGV-0151269_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0151269_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0151269_49	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0151269_49	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0151269_49	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0151269_50	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0151269_51	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0151269_51	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0151269_51	Pfam	PF16478	NA	DUF5055
UHGV-0151269_51	Structural annotation	PF16478	NA	NA
UHGV-0151269_52	PHROG	phrog_158	major tail protein	tail
UHGV-0151269_52	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0151269_52	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0151269_52	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0151269_53	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0151269_54	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0151269_55	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0151269_55	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0151269_56	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0151269_56	Structural annotation	TIGR01560	NA	NA
UHGV-0151269_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0151269_57	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0151269_57	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0151269_57	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0151269_57	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0151269_60	eggNOG-mapper	1064535.MELS_1945	NA	NA
UHGV-0151269_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0151269_61	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0151269_61	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0151269_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151269_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0151269_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0151269_63	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0151269_63	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0151269_63	COG	COG5410	NA	NA
UHGV-0151269_63	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA