UHGV-0151320

Genome information

Genome length 27,116 bps

CDS count 43

Completeness 64.83% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151320
vOTU ID	vOTU-027482
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_480608
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.19
Jumbo phage	No

Genome content
Genome length	27,116 bps
GC content	54.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	95.77%
Average CDS length	608.86 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151320_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0151320_2	Structural annotation	PF12510	NA	NA
UHGV-0151320_3	PHROG	phrog_20016	NA	unknown function
UHGV-0151320_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0151320_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0151320_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0151320_5	PHROG	phrog_16490	NA	unknown function
UHGV-0151320_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0151320_6	PHROG	phrog_22984	NA	unknown function
UHGV-0151320_7	PHROG	phrog_21718	NA	unknown function
UHGV-0151320_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0151320_8	PHROG	phrog_3754	NA	unknown function
UHGV-0151320_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0151320_9	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0151320_10	PHROG	phrog_14030	NA	unknown function
UHGV-0151320_10	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0151320_10	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0151320_10	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0151320_11	PHROG	phrog_6918	holin	lysis
UHGV-0151320_11	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0151320_11	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0151320_11	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0151320_11	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0151320_14	PHROG	phrog_35892	NA	unknown function
UHGV-0151320_14	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0151320_14	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0151320_14	Structural annotation	PF13306	NA	NA
UHGV-0151320_15	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0151320_15	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0151320_16	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0151320_16	COG	COG4447	NA	NA
UHGV-0151320_16	Structural annotation	PF07484	NA	NA
UHGV-0151320_17	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0151320_17	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0151320_18	PHROG	phrog_18725	NA	unknown function
UHGV-0151320_18	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0151320_20	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0151320_21	PHROG	phrog_13879	NA	unknown function
UHGV-0151320_21	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0151320_21	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0151320_22	PHROG	phrog_1194	NA	unknown function
UHGV-0151320_22	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0151320_22	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0151320_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0151320_23	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0151320_23	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0151320_23	COG	COG1511	NA	NA
UHGV-0151320_23	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0151320_24	PHROG	phrog_806	NA	unknown function
UHGV-0151320_24	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0151320_24	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0151320_24	Pfam	PF11611	NA	DUF4352
UHGV-0151320_24	Structural annotation	PF11611, PF06832, MF_00791, NF003967, COG2967	NA	NA
UHGV-0151320_25	PHROG	phrog_706	NA	unknown function
UHGV-0151320_25	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0151320_25	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0151320_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0151320_25	Structural annotation	PF06854	NA	NA
UHGV-0151320_26	PHROG	phrog_11299	NA	unknown function
UHGV-0151320_26	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0151320_26	Structural annotation	PF10666	NA	NA
UHGV-0151320_27	PHROG	phrog_3099	NA	unknown function
UHGV-0151320_27	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0151320_27	Structural annotation	TIGR02126	NA	NA
UHGV-0151320_28	PHROG	phrog_3266	tail completion	connector
UHGV-0151320_28	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0151320_28	Structural annotation	PF12691	NA	NA
UHGV-0151320_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0151320_29	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0151320_29	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0151320_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0151320_29	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0151320_30	PHROG	phrog_3366	NA	unknown function
UHGV-0151320_30	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0151320_30	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0151320_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0151320_31	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-0151320_32	PHROG	phrog_29	major head protein	head and packaging
UHGV-0151320_32	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0151320_32	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0151320_32	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0151320_32	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0151320_33	PHROG	phrog_909	major head protein	head and packaging
UHGV-0151320_33	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0151320_33	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0151320_33	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0151320_33	Structural annotation	PF02924	NA	NA
UHGV-0151320_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0151320_34	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0151320_34	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0151320_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0151320_34	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0151320_36	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0151320_36	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0151320_36	Structural annotation	PF20111	NA	NA
UHGV-0151320_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0151320_37	eggNOG-mapper	1232443.BAIA02000078_gene34	cell adhesion	NA
UHGV-0151320_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0151320_37	COG	COG2369	NA	NA
UHGV-0151320_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151320_38	UniRef90	UniRef90_UPI0011CC6E20	AP2 domain-containing protein	NA
UHGV-0151320_38	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0151320_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0151320_39	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0151320_39	eggNOG-mapper	1232443.BAIA02000078_gene35	NA	NA
UHGV-0151320_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0151320_39	COG	COG2369	NA	NA
UHGV-0151320_39	Structural annotation	PF06152	NA	NA
UHGV-0151320_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0151320_40	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0151320_40	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0151320_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0151320_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151320_41	PHROG	phrog_10250	NA	unknown function
UHGV-0151320_41	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0151320_41	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0151320_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0151320_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0151320_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151320_41	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0151320_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0151320_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0151320_42	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0151320_42	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0151320_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0151320_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0151320_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0151320_43	Structural annotation	PF10922, MF_00839	NA	NA