UHGV-0151398

Genome information

vOTU vOTU-022008

Genome length 15,059 bps

CDS count 21

Completeness 72.06% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151398
vOTU ID	vOTU-022008
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_451324
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.98
Jumbo phage	No

Genome content
Genome length	15,059 bps
GC content	34.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	90.71%
Average CDS length	654.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151398_1	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0151398_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0151398_3	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0151398_3	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0151398_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0151398_4	UniRef90	UniRef90_P04332	Portal protein	NA
UHGV-0151398_4	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0151398_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0151398_4	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0151398_5	PHROG	phrog_2248	tail protein	tail
UHGV-0151398_5	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0151398_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0151398_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0151398_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0151398_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0151398_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0151398_6	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0151398_6	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0151398_6	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0151398_8	PHROG	phrog_11037	NA	unknown function
UHGV-0151398_8	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0151398_8	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0151398_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0151398_8	Structural annotation	PF18013	NA	NA
UHGV-0151398_9	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-0151398_9	PHROG	phrog_329	minor tail protein	tail
UHGV-0151398_9	UniRef90	UniRef90_A0A7U9S9Z2	Peptidoglycan endopeptidase RipB	NA
UHGV-0151398_9	eggNOG-mapper	1291050.JAGE01000001_gene1262	NlpC p60 family	NA
UHGV-0151398_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0151398_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0151398_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0151398_9	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0151398_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0151398_11	UniRef90	UniRef90_A0A843HRH6	Phage DNA encapsidation protein	NA
UHGV-0151398_11	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0151398_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0151398_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0151398_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0151398_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0151398_12	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0151398_12	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0151398_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0151398_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0151398_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0151398_14	Structural annotation	PF17427	NA	NA
UHGV-0151398_15	Structural annotation	PF17548	NA	NA
UHGV-0151398_21	KOfam	K09681	gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon	NA
UHGV-0151398_21	UniRef90	UniRef90_A0A645CNX4	HTH-type transcriptional regulator GltC	NA
UHGV-0151398_21	eggNOG-mapper	411463.EUBVEN_02057	LysR substrate binding domain	NA
UHGV-0151398_21	Pfam	PF03466	LysR substrate binding domain	LysR_substrate
UHGV-0151398_21	COG	COG0583	DNA-binding transcriptional regulator, LysR family	NA