UHGV-0151438

Genome information

Genome length 39,681 bps

CDS count 53

Completeness 92.50% (high-quality)

geNomad score 0.9645

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151438
vOTU ID	vOTU-010545
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_459690
BioSample	SAMN05971604
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9645
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.18
Jumbo phage	No

Genome content
Genome length	39,681 bps
GC content	37.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	86.55%
Average CDS length	649.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151438_1	KOfam	K02049	ABC.SN.A; NitT/TauT family transport system ATP-binding protein	NA
UHGV-0151438_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0151438_1	UniRef90	UniRef90_A0A1Q6MMU0	Spermidine/putrescine ABC transporter ATP-binding protein	NA
UHGV-0151438_1	eggNOG-mapper	1123075.AUDP01000036_gene1261	ABC-type nitrate sulfonate bicarbonate transport system ATPase component	NA
UHGV-0151438_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0151438_1	COG	COG1116	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	NA
UHGV-0151438_2	KOfam	K14059	int; integrase	NA
UHGV-0151438_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0151438_2	UniRef90	UniRef90_A0A3A9B3K9	Site-specific integrase	NA
UHGV-0151438_2	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0151438_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0151438_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151438_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151438_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0151438_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0151438_3	UniRef90	UniRef90_UPI000E5D2F29	Abi family protein	NA
UHGV-0151438_3	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0151438_3	PADLOC	AbiD	AbiD	Abi
UHGV-0151438_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0151438_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0151438_4	PHROG	phrog_87	metallo-protease	other
UHGV-0151438_4	UniRef90	UniRef90_A0A373INP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0151438_4	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0151438_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0151438_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0151438_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0151438_5	Structural annotation	PF18768, MF_02066, NF011886, COG5010	NA	NA
UHGV-0151438_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0151438_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0151438_6	UniRef90	UniRef90_U2RAG2	HTH cro/C1-type domain-containing protein	NA
UHGV-0151438_6	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0151438_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151438_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0151438_6	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG3655	NA	NA
UHGV-0151438_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0151438_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0151438_8	UniRef90	UniRef90_A0A3D5WRG0	XRE family transcriptional regulator	NA
UHGV-0151438_8	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151438_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0151438_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151438_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151438_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0151438_9	UniRef90	UniRef90_UPI00128BC177	NA	NA
UHGV-0151438_9	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0151438_9	Pfam	PF05339	NA	DUF739
UHGV-0151438_9	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0151438_9	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0151438_12	Structural annotation	PF09035	NA	NA
UHGV-0151438_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0151438_14	eggNOG-mapper	1235793.C809_03589	NA	NA
UHGV-0151438_14	Structural annotation	PF21578	NA	NA
UHGV-0151438_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0151438_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0151438_15	UniRef90	UniRef90_A0A3B8UHR5	RNase H type-1 domain-containing protein	NA
UHGV-0151438_15	eggNOG-mapper	1235800.C819_00514	RNase H	NA
UHGV-0151438_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0151438_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0151438_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0151438_16	PHROG	phrog_7566	NA	unknown function
UHGV-0151438_16	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0151438_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0151438_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0151438_18	UniRef90	UniRef90_A0A356C6C6	DNA methylase N-4	NA
UHGV-0151438_18	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0151438_18	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0151438_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0151438_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0151438_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0151438_18	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0151438_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0151438_19	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0151438_19	UniRef90	UniRef90_UPI001BBFD8A7	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0151438_19	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0151438_19	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0151438_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0151438_19	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0151438_19	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0151438_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0151438_20	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0151438_20	eggNOG-mapper	1125725.HMPREF1325_1838	NA	NA
UHGV-0151438_20	Pfam	PF14359	NA	DUF4406
UHGV-0151438_20	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0151438_20	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0151438_21	PHROG	phrog_20593	NA	unknown function
UHGV-0151438_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151438_22	UniRef90	UniRef90_A0A3B8SPQ2	RNA polymerase subunit sigma-70	NA
UHGV-0151438_22	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0151438_22	Structural annotation	PF02996	NA	NA
UHGV-0151438_23	PHROG	phrog_32514	NA	unknown function
UHGV-0151438_24	Structural annotation	PF17116	NA	NA
UHGV-0151438_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0151438_25	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0151438_25	UniRef90	UniRef90_UPI001F3465DA	terminase small subunit	NA
UHGV-0151438_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0151438_25	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0151438_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0151438_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151438_25	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0151438_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151438_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0151438_26	UniRef90	UniRef90_UPI001F24FC3E	PBSX family phage terminase large subunit	NA
UHGV-0151438_26	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0151438_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0151438_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0151438_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151438_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0151438_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0151438_27	UniRef90	UniRef90_UPI00195CDA13	phage portal protein	NA
UHGV-0151438_27	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0151438_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151438_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0151438_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0151438_28	UniRef90	UniRef90_A0A3C2B9H7	Ntox50 domain-containing protein	NA
UHGV-0151438_28	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0151438_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0151438_28	COG	COG2369	NA	NA
UHGV-0151438_28	Structural annotation	PF06152, PF18451	NA	NA
UHGV-0151438_29	Structural annotation	PF12305	NA	NA
UHGV-0151438_31	Structural annotation	NF041921	NA	NA
UHGV-0151438_32	UniRef90	UniRef90_R9JJZ1	RHH_1 domain-containing protein	NA
UHGV-0151438_32	eggNOG-mapper	397287.C807_01320	NA	NA
UHGV-0151438_32	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0151438_33	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0151438_33	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-0151438_33	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0151438_33	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0151438_33	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0151438_33	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0151438_33	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0151438_33	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0151438_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0151438_35	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0151438_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0151438_35	COG	COG2369	NA	NA
UHGV-0151438_36	KOfam	K07584	NA	NA
UHGV-0151438_36	PHROG	phrog_4478	peptidase	other
UHGV-0151438_36	UniRef90	UniRef90_UPI000830E3BF	ribosomal-processing cysteine protease Prp	NA
UHGV-0151438_36	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0151438_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0151438_36	COG	COG2868	NA	NA
UHGV-0151438_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0151438_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0151438_37	eggNOG-mapper	1321782.HMPREF1986_02267	NA	NA
UHGV-0151438_37	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0151438_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0151438_38	UniRef90	UniRef90_UPI001D090FF5	phage major capsid protein	NA
UHGV-0151438_38	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0151438_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0151438_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0151438_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0151438_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0151438_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0151438_39	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0151438_39	eggNOG-mapper	903814.ELI_3207	NA	NA
UHGV-0151438_40	PHROG	phrog_3366	NA	unknown function
UHGV-0151438_40	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0151438_40	Pfam	PF20536	NA	DUF6751
UHGV-0151438_40	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0151438_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0151438_41	UniRef90	UniRef90_A0A1M7NJ72	Minor capsid protein	NA
UHGV-0151438_41	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-0151438_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0151438_41	Structural annotation	PF11114	NA	NA
UHGV-0151438_42	PHROG	phrog_3266	tail completion	connector
UHGV-0151438_42	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0151438_42	Structural annotation	PF20765	NA	NA
UHGV-0151438_43	PHROG	phrog_3099	NA	unknown function
UHGV-0151438_43	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0151438_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0151438_44	PHROG	phrog_11299	NA	unknown function
UHGV-0151438_44	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0151438_44	Structural annotation	PF20378	NA	NA
UHGV-0151438_45	PHROG	phrog_706	NA	unknown function
UHGV-0151438_45	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0151438_45	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0151438_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0151438_45	Structural annotation	PF06854	NA	NA
UHGV-0151438_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0151438_46	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0151438_46	COG	COG1511	NA	NA
UHGV-0151438_47	PHROG	phrog_1194	NA	unknown function
UHGV-0151438_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0151438_48	PHROG	phrog_6616	tail protein	tail
UHGV-0151438_48	UniRef90	UniRef90_A0A173R8I5	Peptidase S74 domain-containing protein	NA
UHGV-0151438_48	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0151438_48	COG	COG4926	Phage-related protein	NA
UHGV-0151438_49	PHROG	phrog_38707	NA	unknown function
UHGV-0151438_49	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0151438_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0151438_51	PHROG	phrog_1863	NA	unknown function
UHGV-0151438_51	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0151438_52	PHROG	phrog_1129	holin	lysis
UHGV-0151438_52	UniRef90	UniRef90_A0A356C4S4	Enolase	NA
UHGV-0151438_52	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0151438_52	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0151438_52	Structural annotation	PF06946	NA	NA
UHGV-0151438_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0151438_53	PHROG	phrog_291	endolysin	lysis
UHGV-0151438_53	UniRef90	UniRef90_A0A356C4H3	LysM domain-containing protein	NA
UHGV-0151438_53	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0151438_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0151438_53	Pfam	PF01476	LysM domain	LysM
UHGV-0151438_53	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0151438_53	Structural annotation	PF01183, NF007404, COG3757	NA	NA