UHGV-0151447

Genome information

Genome length 32,578 bps

CDS count 53

Completeness 93.16% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151447
vOTU ID	vOTU-075494
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497538
BioSample	SAMN06110222
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.66
Jumbo phage	No

Genome content
Genome length	32,578 bps
GC content	40.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.83%
Average CDS length	567.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151447_1	UniRef90	UniRef90_R5QKX6	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0151447_1	eggNOG-mapper	1280698.AUJS01000002_gene2767	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0151447_1	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0151447_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0151447_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0151447_2	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-0151447_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0151447_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0151447_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0151447_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0151447_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0151447_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0151447_3	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0151447_3	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0151447_3	UniRef90	UniRef90_UPI001BC64A01	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0151447_3	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0151447_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0151447_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0151447_3	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0151447_4	eggNOG-mapper	1408311.JNJM01000007_gene933	NA	NA
UHGV-0151447_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0151447_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0151447_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151447_6	UniRef90	UniRef90_A0A350VIR9	HTH cro/C1-type domain-containing protein	NA
UHGV-0151447_6	eggNOG-mapper	1005705.HMPREF9967_0944	Peptidase S24-like	NA
UHGV-0151447_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151447_6	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0151447_6	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0151447_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0151447_7	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0151447_7	UniRef90	UniRef90_A0A350VIS0	Transcriptional regulator	NA
UHGV-0151447_7	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0151447_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0151447_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151447_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0151447_11	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0151447_12	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0151447_15	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0151447_15	PHROG	phrog_5696	NA	unknown function
UHGV-0151447_15	UniRef90	UniRef90_A0A0M6WYD5	N6_Mtase domain-containing protein	NA
UHGV-0151447_15	eggNOG-mapper	1215092.PA6_009_00670	N-6 DNA Methylase	NA
UHGV-0151447_15	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0151447_15	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0151447_15	Structural annotation	COG0286	NA	NA
UHGV-0151447_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0151447_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0151447_16	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-0151447_16	eggNOG-mapper	397291.C804_01139	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0151447_16	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0151447_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151447_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0151447_16	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0151447_17	KOfam	K14059	int; integrase	NA
UHGV-0151447_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0151447_17	UniRef90	UniRef90_A0A0M6WVP0	Tyr recombinase domain-containing protein	NA
UHGV-0151447_17	eggNOG-mapper	999413.HMPREF1094_00568	Phage integrase family	NA
UHGV-0151447_17	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0151447_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151447_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151447_17	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0151447_22	eggNOG-mapper	476272.RUMHYD_01923	NA	NA
UHGV-0151447_23	PHROG	phrog_10714	NA	unknown function
UHGV-0151447_23	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0151447_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0151447_27	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0151447_27	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-0151447_27	Structural annotation	PF21578	NA	NA
UHGV-0151447_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151447_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0151447_28	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-0151447_28	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0151447_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0151447_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151447_29	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0151447_29	eggNOG-mapper	330396.A8ATF8_9CAUD	HNH endonuclease	NA
UHGV-0151447_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0151447_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0151447_30	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0151447_30	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0151447_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0151447_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0151447_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0151447_31	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0151447_31	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0151447_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0151447_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0151447_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0151447_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0151447_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0151447_32	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0151447_32	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0151447_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0151447_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0151447_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0151447_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0151447_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0151447_33	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0151447_33	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0151447_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0151447_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0151447_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0151447_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0151447_34	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0151447_34	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0151447_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0151447_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0151447_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0151447_34	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0151447_36	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0151447_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0151447_37	Structural annotation	PF05657	NA	NA
UHGV-0151447_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0151447_38	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0151447_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0151447_38	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0151447_39	PHROG	phrog_88	major tail protein	tail
UHGV-0151447_39	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0151447_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0151447_39	COG	COG5492	NA	NA
UHGV-0151447_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0151447_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0151447_41	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-0151447_41	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0151447_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0151447_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0151447_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0151447_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0151447_42	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0151447_42	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0151447_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0151447_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0151447_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0151447_43	PHROG	phrog_13289	tail protein	tail
UHGV-0151447_43	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0151447_43	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0151447_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0151447_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0151447_43	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0151447_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0151447_44	PHROG	phrog_11037	NA	unknown function
UHGV-0151447_44	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0151447_44	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0151447_44	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0151447_44	Structural annotation	PF18013	NA	NA
UHGV-0151447_45	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0151447_45	COG	COG4675	Phage tail collar domain	NA
UHGV-0151447_46	PHROG	phrog_15594	NA	unknown function
UHGV-0151447_46	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0151447_46	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0151447_47	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0151447_48	PHROG	phrog_24103	NA	unknown function
UHGV-0151447_48	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0151447_49	PHROG	phrog_31573	NA	unknown function
UHGV-0151447_49	eggNOG-mapper	1410622.JNKY01000013_gene1449	NA	NA
UHGV-0151447_49	Structural annotation	PF14606, PF01664, NF007819, COG2845	NA	NA
UHGV-0151447_50	KOfam	K07273	acm; lysozyme	NA
UHGV-0151447_50	PHROG	phrog_291	endolysin	lysis
UHGV-0151447_50	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0151447_50	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-0151447_50	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0151447_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0151447_50	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0151447_51	PHROG	phrog_199	holin	lysis
UHGV-0151447_51	UniRef90	UniRef90_A0A349YRM9	Holin	NA
UHGV-0151447_51	eggNOG-mapper	411468.CLOSCI_00532	toxin secretion phage lysis holin	NA
UHGV-0151447_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0151447_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0151447_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0151447_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0151447_53	PHROG	phrog_13890	NA	unknown function
UHGV-0151447_53	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0151447_53	eggNOG-mapper	877414.ATWA01000049_gene449	NA	NA
UHGV-0151447_53	Pfam	PF09274	ParG	ParG