UHGV-0151462

Genome information

vOTU vOTU-019494

Genome length 49,152 bps

CDS count 81

Completeness 83.46% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151462
vOTU ID	vOTU-019494
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_492586
BioSample	SAMN06110256
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.57
Jumbo phage	No

Genome content
Genome length	49,152 bps
GC content	38.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	90.59%
Average CDS length	553.82 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151462_1	KOfam	K14059	int; integrase	NA
UHGV-0151462_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0151462_1	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0151462_1	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0151462_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0151462_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0151462_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151462_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151462_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0151462_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0151462_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0151462_2	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0151462_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0151462_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0151462_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0151462_2	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0151462_4	PHROG	phrog_17284	NA	unknown function
UHGV-0151462_4	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0151462_4	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0151462_4	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0151462_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0151462_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0151462_6	PHROG	phrog_10714	NA	unknown function
UHGV-0151462_6	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0151462_7	Structural annotation	COG4446	NA	NA
UHGV-0151462_8	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0151462_8	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0151462_9	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0151462_9	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0151462_10	PHROG	phrog_21026	NA	unknown function
UHGV-0151462_15	PHROG	phrog_9804	NA	unknown function
UHGV-0151462_15	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0151462_15	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0151462_15	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0151462_15	Structural annotation	PF11417	NA	NA
UHGV-0151462_16	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0151462_16	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0151462_16	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0151462_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0151462_17	UniRef90	UniRef90_A0A1Y4R9D2	Radical SAM protein	NA
UHGV-0151462_17	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0151462_17	COG	COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	NA
UHGV-0151462_17	Structural annotation	PF04055, MF_01225_A, TIGR04303, COG0535	NA	NA
UHGV-0151462_18	PHROG	phrog_19106	NA	unknown function
UHGV-0151462_18	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0151462_18	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0151462_18	Structural annotation	TIGR01453	NA	NA
UHGV-0151462_19	PHROG	phrog_20593	NA	unknown function
UHGV-0151462_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0151462_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0151462_21	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0151462_21	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0151462_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0151462_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0151462_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0151462_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0151462_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0151462_22	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151462_22	UniRef90	UniRef90_UPI0013794BCD	HNH endonuclease	NA
UHGV-0151462_22	eggNOG-mapper	864702.OsccyDRAFT_0645	HNH endonuclease	NA
UHGV-0151462_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0151462_22	Structural annotation	PF13392	NA	NA
UHGV-0151462_23	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0151462_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0151462_23	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0151462_23	eggNOG-mapper	1294142.CINTURNW_1011	Metallo-beta-lactamase superfamily	NA
UHGV-0151462_23	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0151462_23	dbAPIS	APIS058	NA	NA
UHGV-0151462_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0151462_23	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0151462_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0151462_25	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0151462_25	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0151462_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0151462_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0151462_26	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0151462_26	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0151462_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0151462_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0151462_26	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0151462_27	PHROG	phrog_25456	NA	unknown function
UHGV-0151462_28	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151462_28	UniRef90	UniRef90_UPI001F3F277E	recombinase RecT	NA
UHGV-0151462_28	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0151462_28	Pfam	PF03837	RecT family	RecT
UHGV-0151462_28	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0151462_29	PHROG	phrog_4433	NA	unknown function
UHGV-0151462_29	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0151462_29	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0151462_29	Structural annotation	NF007410	NA	NA
UHGV-0151462_34	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0151462_34	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151462_34	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0151462_34	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0151462_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0151462_34	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0151462_37	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0151462_37	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0151462_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0151462_38	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0151462_38	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0151462_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0151462_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0151462_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0151462_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0151462_39	COG	COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	NA
UHGV-0151462_41	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-0151462_41	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0151462_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151462_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0151462_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0151462_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0151462_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151462_42	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0151462_42	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0151462_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151462_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0151462_42	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151462_43	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0151462_45	PHROG	phrog_24159	tail fiber protein	tail
UHGV-0151462_45	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0151462_46	PHROG	phrog_6616	tail protein	tail
UHGV-0151462_46	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0151462_46	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0151462_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0151462_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0151462_47	PHROG	phrog_1194	NA	unknown function
UHGV-0151462_47	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0151462_47	Pfam	PF20458	NA	DUF6711
UHGV-0151462_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0151462_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0151462_48	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0151462_48	eggNOG-mapper	397288.C806_03052	domain protein	NA
UHGV-0151462_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0151462_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0151462_49	PHROG	phrog_291	endolysin	lysis
UHGV-0151462_49	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0151462_49	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0151462_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0151462_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0151462_49	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0151462_52	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0151462_52	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0151462_53	Structural annotation	PF05657	NA	NA
UHGV-0151462_54	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0151462_54	AcrCatalog	cluster_24841	NA	NA
UHGV-0151462_55	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0151462_55	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0151462_56	PHROG	phrog_1129	holin	lysis
UHGV-0151462_56	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0151462_56	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0151462_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0151462_56	Structural annotation	PF06946	NA	NA
UHGV-0151462_57	PHROG	phrog_4105	NA	unknown function
UHGV-0151462_57	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0151462_58	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0151462_59	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0151462_59	Structural annotation	PF21169	NA	NA
UHGV-0151462_60	PHROG	phrog_29	major head protein	head and packaging
UHGV-0151462_60	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0151462_60	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0151462_60	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0151462_60	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0151462_61	PHROG	phrog_909	major head protein	head and packaging
UHGV-0151462_61	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0151462_62	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0151462_63	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0151462_63	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0151462_63	eggNOG-mapper	1176423.I6R1H0_9VIRU	Phage Mu protein F like protein	NA
UHGV-0151462_63	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0151462_63	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0151462_64	PHROG	phrog_64	portal protein	head and packaging
UHGV-0151462_64	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0151462_64	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0151462_64	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151462_64	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0151462_65	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151462_65	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0151462_65	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0151462_65	Pfam	PF07374	NA	DUF1492
UHGV-0151462_65	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0151462_65	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0151462_66	PHROG	phrog_9529	NA	unknown function
UHGV-0151462_66	UniRef90	UniRef90_UPI000836A084	NA	NA
UHGV-0151462_66	eggNOG-mapper	202752.JL53_03720	NA	NA
UHGV-0151462_66	Pfam	PF04480	NA	DUF559
UHGV-0151462_66	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0151462_66	Structural annotation	PF04480, NF007294, COG2852	NA	NA
UHGV-0151462_67	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0151462_67	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0151462_67	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0151462_67	COG	COG5410	NA	NA
UHGV-0151462_67	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0151462_68	PHROG	phrog_2316	NA	unknown function
UHGV-0151462_68	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0151462_68	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0151462_68	Pfam	PF16475	NA	DUF5052
UHGV-0151462_68	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0151462_69	PHROG	phrog_1233	NA	unknown function
UHGV-0151462_69	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0151462_69	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0151462_69	Structural annotation	PF13058	NA	NA
UHGV-0151462_73	UniRef90	UniRef90_A0A8D9PG29	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0151462_74	Structural annotation	PF04466	NA	NA
UHGV-0151462_77	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0151462_77	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0151462_78	PHROG	phrog_22444	NA	unknown function
UHGV-0151462_78	UniRef90	UniRef90_UPI001CC2634F	helix-turn-helix domain-containing protein	NA
UHGV-0151462_78	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-0151462_78	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0151462_78	Structural annotation	PF05584, NF000243, COG0640	NA	NA
UHGV-0151462_81	PHROG	phrog_236	nucleotide kinase	other
UHGV-0151462_81	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0151462_81	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0151462_81	Pfam	PF11753	NA	DUF3310
UHGV-0151462_81	Structural annotation	PF11753	NA	NA