UHGV-0151596

Genome information

Genome length 35,797 bps

CDS count 61

Completeness 54.74% (medium-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151596
vOTU ID	vOTU-027485
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_456601
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	54.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.59
Jumbo phage	No

Genome content
Genome length	35,797 bps
GC content	49.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.81%
Average CDS length	536.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151596_1	KOfam	K19273	sat4; streptothricin acetyltransferase [EC:2.3.-.-]	NA
UHGV-0151596_1	UniRef90	UniRef90_R6YQI2	Acetyltransferase GNAT family	NA
UHGV-0151596_1	eggNOG-mapper	1499689.CCNN01000007_gene1976	Acetyltransferase (GNAT) family	NA
UHGV-0151596_1	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0151596_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0151596_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151596_2	UniRef90	UniRef90_R6BA48	Transcriptional repressor of PBSX genes	NA
UHGV-0151596_2	eggNOG-mapper	235909.GK0494	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151596_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151596_2	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0151596_3	PHROG	phrog_1914	NA	unknown function
UHGV-0151596_3	UniRef90	UniRef90_R6D561	Peptidase_M78 domain-containing protein	NA
UHGV-0151596_3	eggNOG-mapper	665956.HMPREF1032_03592	NA	NA
UHGV-0151596_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0151596_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0151596_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0151596_4	eggNOG-mapper	1499683.CCFF01000013_gene211	NA	NA
UHGV-0151596_5	KOfam	K14059	int; integrase	NA
UHGV-0151596_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0151596_5	UniRef90	UniRef90_R6BQB5	Putative integrase	NA
UHGV-0151596_5	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0151596_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151596_5	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0151596_6	UniRef90	UniRef90_A0A352UR60	Nucleotidyltransferase	NA
UHGV-0151596_6	eggNOG-mapper	1094508.Tsac_0724	TIGRFAM nucleotidyltransferase substrate binding protein, HI0074 family	NA
UHGV-0151596_6	Pfam	PF08780	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
UHGV-0151596_6	NCBIFam	TIGR01987.1	HI0074 family nucleotidyltransferase substrate-binding subunit	NA
UHGV-0151596_6	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0151596_6	Structural annotation	PF08780, TIGR01987, COG2445	NA	NA
UHGV-0151596_7	KOfam	K07075	NA	NA
UHGV-0151596_7	UniRef90	UniRef90_A0A352UR59	Polbeta domain-containing protein	NA
UHGV-0151596_7	eggNOG-mapper	718252.FP2_31830	Nucleotidyltransferase substrate binding protein like	NA
UHGV-0151596_7	Pfam	PF18765	Polymerase beta, Nucleotidyltransferase	Polbeta
UHGV-0151596_7	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0151596_7	Structural annotation	PF18765, NF010309, COG1669	NA	NA
UHGV-0151596_8	PHROG	phrog_87	metallo-protease	other
UHGV-0151596_8	UniRef90	UniRef90_A0A371AUE0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0151596_8	eggNOG-mapper	428125.CLOLEP_01867	NA	NA
UHGV-0151596_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0151596_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0151596_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151596_9	UniRef90	UniRef90_A0A371AUE2	XRE family transcriptional regulator	NA
UHGV-0151596_9	eggNOG-mapper	1203606.HMPREF1526_00302	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151596_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151596_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151596_9	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0151596_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151596_10	UniRef90	UniRef90_R8W4H3	HTH cro/C1-type domain-containing protein	NA
UHGV-0151596_10	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151596_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151596_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151596_10	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0151596_11	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0151596_11	UniRef90	UniRef90_UPI000D10EEDD	Rha family transcriptional regulator	NA
UHGV-0151596_11	eggNOG-mapper	755731.Clo1100_3608	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0151596_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0151596_11	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0151596_11	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0151596_13	eggNOG-mapper	1291050.JAGE01000001_gene952	NA	NA
UHGV-0151596_13	AcrCatalog	cluster_68720	NA	NA
UHGV-0151596_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0151596_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0151596_14	UniRef90	UniRef90_A0A5C0SEH3	Bro-N domain-containing protein	NA
UHGV-0151596_14	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0151596_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0151596_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0151596_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0151596_14	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0151596_15	Structural annotation	PF21291, TIGR00673, COG3655	NA	NA
UHGV-0151596_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151596_19	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0151596_20	Structural annotation	PF14445	NA	NA
UHGV-0151596_21	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0151596_21	UniRef90	UniRef90_UPI001E2B9DFF	host-nuclease inhibitor Gam family protein	NA
UHGV-0151596_21	eggNOG-mapper	926561.KB900619_gene2386	Bacteriophage Mu Gam like protein	NA
UHGV-0151596_21	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0151596_21	Structural annotation	PF07352	NA	NA
UHGV-0151596_22	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151596_22	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0151596_22	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0151596_22	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0151596_23	PHROG	phrog_398	NA	unknown function
UHGV-0151596_23	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0151596_23	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0151596_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0151596_23	Structural annotation	PF16784	NA	NA
UHGV-0151596_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0151596_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0151596_24	UniRef90	UniRef90_UPI001C0F768C	single-stranded DNA-binding protein	NA
UHGV-0151596_24	eggNOG-mapper	537013.CLOSTMETH_00062	Single-stranded DNA-binding protein	NA
UHGV-0151596_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0151596_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0151596_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0151596_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0151596_24	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0151596_25	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0151596_25	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-0151596_25	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0151596_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0151596_25	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0151596_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151596_28	UniRef90	UniRef90_A0A6N2R4S8	Sigma70_r4 domain-containing protein	NA
UHGV-0151596_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0151596_28	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-0151596_29	UniRef90	UniRef90_A0A4Z0Y8T7	Helix-turn-helix domain protein	NA
UHGV-0151596_29	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151596_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151596_29	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0151596_32	Structural annotation	NF007312, COG2336	NA	NA
UHGV-0151596_33	UniRef90	UniRef90_A0A1C6IDQ4	RHH_1 domain-containing protein	NA
UHGV-0151596_33	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0151596_33	Structural annotation	PF01402, NF010256	NA	NA
UHGV-0151596_34	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0151596_34	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0151596_34	Structural annotation	PF13542	NA	NA
UHGV-0151596_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151596_35	PHROG	phrog_10250	NA	unknown function
UHGV-0151596_35	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0151596_35	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0151596_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0151596_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0151596_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151596_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0151596_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0151596_36	UniRef90	UniRef90_A0A1G9Z0H1	Phage portal protein, SPP1 family	NA
UHGV-0151596_36	eggNOG-mapper	1232449.BAHV02000008_gene628	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0151596_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151596_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0151596_37	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0151596_37	UniRef90	UniRef90_A0A410PZY6	Phage_Mu_F domain-containing protein	NA
UHGV-0151596_37	eggNOG-mapper	1232449.BAHV02000008_gene629	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0151596_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0151596_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0151596_37	COG	COG2369	NA	NA
UHGV-0151596_38	UniRef90	UniRef90_D5GY03	Conserved protein	NA
UHGV-0151596_38	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0151596_38	Structural annotation	PF20111	NA	NA
UHGV-0151596_39	UniRef90	UniRef90_R6C6L8	Fibronectin autolysin	NA
UHGV-0151596_39	Structural annotation	PF06810	NA	NA
UHGV-0151596_40	PHROG	phrog_283	major head protein	head and packaging
UHGV-0151596_40	UniRef90	UniRef90_A0A174ACN4	p22 coat protein-gene protein 5	NA
UHGV-0151596_40	eggNOG-mapper	1131462.DCF50_p1388	P22 coat protein - gene protein 5	NA
UHGV-0151596_40	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0151596_40	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0151596_42	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0151596_42	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0151596_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0151596_43	UniRef90	UniRef90_UPI00082F3F7B	HK97 gp10 family phage protein	NA
UHGV-0151596_43	eggNOG-mapper	318464.IO99_00605	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0151596_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0151596_43	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0151596_44	eggNOG-mapper	1105031.HMPREF1141_0993	NA	NA
UHGV-0151596_44	Pfam	PF20765	NA	DUF6838
UHGV-0151596_45	PHROG	phrog_279	tail sheath	tail
UHGV-0151596_45	UniRef90	UniRef90_UPI00082FBA50	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0151596_45	eggNOG-mapper	1121334.KB911071_gene1981	Phage tail sheath C-terminal domain	NA
UHGV-0151596_45	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0151596_45	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0151596_45	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0151596_46	PHROG	phrog_365	tail protein	tail
UHGV-0151596_46	UniRef90	UniRef90_A0A1G9Z2X5	Phage tail tube protein	NA
UHGV-0151596_46	eggNOG-mapper	1232449.BAHV02000008_gene639	Phage tail tube protein	NA
UHGV-0151596_46	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0151596_46	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0151596_47	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0151596_47	UniRef90	UniRef90_A0A6N8HZT8	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0151596_47	eggNOG-mapper	1105031.HMPREF1141_0996	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0151596_47	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0151596_47	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0151596_48	UniRef90	UniRef90_W4V8Q0	Tail length tape measure protein	NA
UHGV-0151596_48	eggNOG-mapper	1232449.BAHV02000008_gene641	sister chromatid segregation	NA
UHGV-0151596_48	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0151596_48	Structural annotation	PF20155, TIGR01760	NA	NA
UHGV-0151596_49	PHROG	phrog_380	endolysin	lysis
UHGV-0151596_49	eggNOG-mapper	1105031.HMPREF1141_0999	NA	NA
UHGV-0151596_50	PHROG	phrog_400	tail protein	tail
UHGV-0151596_50	UniRef90	UniRef90_J7J1F3	Phage late control gene D protein (GPD)	NA
UHGV-0151596_50	eggNOG-mapper	1121334.KB911071_gene1976	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0151596_50	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0151596_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0151596_51	eggNOG-mapper	1121334.KB911071_gene1975	NA	NA
UHGV-0151596_52	PHROG	phrog_120	baseplate protein	tail
UHGV-0151596_52	UniRef90	UniRef90_UPI0005A8315B	NA	NA
UHGV-0151596_52	eggNOG-mapper	1121334.KB911071_gene1974	NA	NA
UHGV-0151596_52	Pfam	PF10934	NA	DUF2634
UHGV-0151596_52	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0151596_52	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0151596_53	PHROG	phrog_6	baseplate protein	tail
UHGV-0151596_53	UniRef90	UniRef90_UPI0018985CC3	baseplate J/gp47 family protein	NA
UHGV-0151596_53	eggNOG-mapper	1105031.HMPREF1141_1407	Baseplate J-like protein	NA
UHGV-0151596_53	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0151596_53	COG	COG3299	NA	NA
UHGV-0151596_53	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0151596_54	PHROG	phrog_521	tail protein	tail
UHGV-0151596_54	eggNOG-mapper	1232449.BAHV02000008_gene647	NA	NA
UHGV-0151596_54	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0151596_54	COG	COG3778	NA	NA
UHGV-0151596_54	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0151596_55	eggNOG-mapper	1120949.KB903297_gene5520	Subtilase family	NA
UHGV-0151596_55	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0151596_55	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0151596_55	Structural annotation	PF16323, PF16974, NF010681, COG3401	NA	NA
UHGV-0151596_57	PHROG	phrog_2310	NA	unknown function
UHGV-0151596_58	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0151596_58	PHROG	phrog_12747	NA	unknown function
UHGV-0151596_58	UniRef90	UniRef90_UPI0003F5CCB6	Fic/DOC family protein	NA
UHGV-0151596_58	eggNOG-mapper	1123075.AUDP01000004_gene836	Fic/DOC family	NA
UHGV-0151596_58	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0151596_58	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0151596_58	Structural annotation	PF02661, NF007672, COG2184	NA	NA
UHGV-0151596_59	UniRef90	UniRef90_V2YAR1	RHH_1 domain-containing protein	NA
UHGV-0151596_59	eggNOG-mapper	1378168.N510_02331	Ribbon-helix-helix protein, copG family	NA
UHGV-0151596_59	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0151596_59	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0151596_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0151596_61	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0151596_61	UniRef90	UniRef90_UPI001C0F4BC0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0151596_61	eggNOG-mapper	1487921.DP68_11225	Phage antirepressor protein	NA
UHGV-0151596_61	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0151596_61	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0151596_61	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA