UHGV-0151655

Genome information

Genome length 32,314 bps

CDS count 52

Completeness 79.28% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151655
vOTU ID	vOTU-027488
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495437
BioSample	SAMN06110445
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.46
Jumbo phage	No

Genome content
Genome length	32,314 bps
GC content	51.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.67%
Average CDS length	585.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151655_1	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151655_1	UniRef90	UniRef90_UPI0018978832	ERF family protein	NA
UHGV-0151655_1	eggNOG-mapper	1289595.M1Q0X6_9VIRU	ERF superfamily	NA
UHGV-0151655_1	Pfam	PF04404	ERF superfamily	ERF
UHGV-0151655_1	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0151655_2	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0151655_2	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0151655_2	Structural annotation	PF05772	NA	NA
UHGV-0151655_3	PHROG	phrog_7566	NA	unknown function
UHGV-0151655_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0151655_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0151655_4	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0151655_4	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0151655_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0151655_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0151655_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0151655_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0151655_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0151655_5	PHROG	phrog_28936	NA	unknown function
UHGV-0151655_5	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0151655_5	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0151655_6	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0151655_6	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0151655_6	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0151655_6	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0151655_6	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0151655_6	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0151655_6	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0151655_7	Structural annotation	PF11417	NA	NA
UHGV-0151655_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0151655_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0151655_9	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0151655_9	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0151655_9	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0151655_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0151655_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0151655_9	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0151655_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0151655_10	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0151655_10	UniRef90	UniRef90_A0A379C663	Holliday junction resolvase	NA
UHGV-0151655_10	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0151655_10	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0151655_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0151655_10	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0151655_11	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0151655_14	UniRef90	UniRef90_UPI00156FA052	NA	NA
UHGV-0151655_14	eggNOG-mapper	1395587.P364_0110505	NA	NA
UHGV-0151655_14	Structural annotation	PF16475	NA	NA
UHGV-0151655_19	PHROG	phrog_11237	NA	unknown function
UHGV-0151655_19	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0151655_19	Structural annotation	NF009167	NA	NA
UHGV-0151655_20	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0151655_20	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0151655_20	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0151655_20	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0151655_20	Structural annotation	PF16677	NA	NA
UHGV-0151655_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151655_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0151655_21	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0151655_21	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0151655_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0151655_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0151655_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0151655_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151655_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0151655_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0151655_22	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0151655_22	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0151655_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151655_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0151655_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0151655_24	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0151655_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0151655_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0151655_24	COG	COG2369	NA	NA
UHGV-0151655_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0151655_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0151655_26	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0151655_26	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0151655_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0151655_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0151655_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0151655_27	Structural annotation	PF06810	NA	NA
UHGV-0151655_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0151655_28	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0151655_28	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0151655_28	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0151655_30	PHROG	phrog_17977	NA	unknown function
UHGV-0151655_30	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0151655_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0151655_31	PHROG	phrog_17405	head protein	head and packaging
UHGV-0151655_31	Structural annotation	PF11367	NA	NA
UHGV-0151655_32	PHROG	phrog_885	major tail protein	tail
UHGV-0151655_32	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0151655_32	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0151655_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0151655_35	PHROG	phrog_19074	NA	unknown function
UHGV-0151655_35	UniRef90	UniRef90_UPI0012EE7FD3	phage tail tape measure protein	NA
UHGV-0151655_35	eggNOG-mapper	411462.DORLON_00777	Phage-related minor tail protein	NA
UHGV-0151655_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0151655_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0151655_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0151655_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0151655_36	PHROG	phrog_36410	NA	unknown function
UHGV-0151655_36	UniRef90	UniRef90_A0A160INM5	Phage tail protein	NA
UHGV-0151655_36	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0151655_36	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0151655_37	PHROG	phrog_538	minor tail protein	tail
UHGV-0151655_37	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0151655_37	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0151655_37	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0151655_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0151655_38	PHROG	phrog_9534	head protein	head and packaging
UHGV-0151655_38	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0151655_38	Structural annotation	PF21567	NA	NA
UHGV-0151655_39	Structural annotation	PF10651	NA	NA
UHGV-0151655_41	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0151655_41	PHROG	phrog_7698	endolysin	lysis
UHGV-0151655_41	UniRef90	UniRef90_E5DTQ2	Putative muramidase	NA
UHGV-0151655_41	eggNOG-mapper	1410624.JNKK01000045_gene544	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0151655_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0151655_41	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0151655_41	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0151655_41	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0151655_42	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0151655_42	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0151655_43	PHROG	phrog_13256	NA	unknown function
UHGV-0151655_43	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0151655_44	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0151655_44	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0151655_44	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0151655_45	PHROG	phrog_3754	NA	unknown function
UHGV-0151655_45	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0151655_46	PHROG	phrog_21718	NA	unknown function
UHGV-0151655_46	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0151655_47	PHROG	phrog_22984	NA	unknown function
UHGV-0151655_48	PHROG	phrog_16490	NA	unknown function
UHGV-0151655_48	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0151655_49	PHROG	phrog_20016	NA	unknown function
UHGV-0151655_49	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0151655_49	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0151655_49	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0151655_50	Structural annotation	PF12510	NA	NA
UHGV-0151655_51	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA