UHGV-0151716

Genome information

Genome length 34,295 bps

CDS count 42

Completeness 95.01% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151716
vOTU ID	vOTU-010553
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_482740
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.24
Jumbo phage	No

Genome content
Genome length	34,295 bps
GC content	43.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.25%
Average CDS length	763.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151716_1	PHROG	phrog_18107	NA	unknown function
UHGV-0151716_1	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0151716_1	Structural annotation	PF05037	NA	NA
UHGV-0151716_2	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0151716_2	UniRef90	UniRef90_R6T0H0	ERCC4 domain-containing protein	NA
UHGV-0151716_2	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0151716_2	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0151716_2	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0151716_2	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0151716_3	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0151716_3	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-0151716_3	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0151716_3	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0151716_3	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0151716_4	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0151716_4	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0151716_4	UniRef90	UniRef90_R6SWZ2	SF4 helicase domain-containing protein	NA
UHGV-0151716_4	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0151716_4	Pfam	PF13481	AAA domain	AAA_25
UHGV-0151716_4	COG	COG0305	Replicative DNA helicase	NA
UHGV-0151716_4	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0151716_7	PHROG	phrog_9958	NA	unknown function
UHGV-0151716_7	UniRef90	UniRef90_W0U729	NA	NA
UHGV-0151716_7	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0151716_7	Pfam	PF19789	NA	DUF6273
UHGV-0151716_7	Structural annotation	PF19789	NA	NA
UHGV-0151716_9	eggNOG-mapper	1235793.C809_02207	NA	NA
UHGV-0151716_10	PHROG	phrog_16951	NA	unknown function
UHGV-0151716_10	UniRef90	UniRef90_A0A1C6DDN5	YopX protein	NA
UHGV-0151716_10	eggNOG-mapper	1160721.RBI_II00399	NA	NA
UHGV-0151716_11	PHROG	phrog_8684	NA	unknown function
UHGV-0151716_11	UniRef90	UniRef90_A0A373XZJ5	YopX domain-containing protein	NA
UHGV-0151716_11	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0151716_11	Pfam	PF09643	YopX protein	YopX
UHGV-0151716_11	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0151716_11	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0151716_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151716_13	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-0151716_13	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-0151716_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0151716_13	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0151716_14	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151716_14	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0151716_14	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0151716_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151716_15	PHROG	phrog_1066	NA	unknown function
UHGV-0151716_15	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0151716_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0151716_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0151716_16	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0151716_16	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0151716_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0151716_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0151716_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0151716_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0151716_17	PHROG	phrog_21498	NA	unknown function
UHGV-0151716_17	UniRef90	UniRef90_A0A414Z8M3	Chromosome partitioning protein ParB (Fragment)	NA
UHGV-0151716_17	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0151716_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0151716_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0151716_18	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0151716_18	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0151716_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0151716_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0151716_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0151716_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0151716_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0151716_19	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0151716_19	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0151716_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0151716_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0151716_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0151716_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0151716_20	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0151716_20	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0151716_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0151716_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0151716_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0151716_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0151716_21	PHROG	phrog_5223	neck protein	connector
UHGV-0151716_21	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0151716_21	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0151716_21	Structural annotation	TIGR01560	NA	NA
UHGV-0151716_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0151716_22	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0151716_22	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0151716_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0151716_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0151716_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0151716_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0151716_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0151716_23	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0151716_23	eggNOG-mapper	1220589.CD32_01275	NA	NA
UHGV-0151716_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0151716_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0151716_24	Structural annotation	PF20765	NA	NA
UHGV-0151716_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0151716_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0151716_25	UniRef90	UniRef90_A0A374HLA8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0151716_25	eggNOG-mapper	889876.E2GLZ4_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0151716_25	Structural annotation	TIGR00571, COG0338	NA	NA
UHGV-0151716_26	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0151716_26	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0151716_26	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0151716_27	Structural annotation	PF17388	NA	NA
UHGV-0151716_28	PHROG	phrog_23464	NA	unknown function
UHGV-0151716_28	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0151716_28	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0151716_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0151716_28	Structural annotation	COG5280	NA	NA
UHGV-0151716_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0151716_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0151716_29	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0151716_30	PHROG	phrog_3558	tail protein	tail
UHGV-0151716_30	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0151716_30	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0151716_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0151716_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0151716_30	COG	COG4926	Phage-related protein	NA
UHGV-0151716_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0151716_31	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0151716_32	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0151716_32	Structural annotation	PF10651	NA	NA
UHGV-0151716_34	PHROG	phrog_134	NA	unknown function
UHGV-0151716_34	UniRef90	UniRef90_A0A373PY86	XkdX family protein	NA
UHGV-0151716_34	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0151716_34	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0151716_34	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0151716_34	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0151716_35	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-0151716_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0151716_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0151716_36	PHROG	phrog_8781	endolysin	lysis
UHGV-0151716_36	UniRef90	UniRef90_A0A373PY71	CHAP domain-containing protein	NA
UHGV-0151716_36	eggNOG-mapper	1179226.AJXO01000005_gene1880	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0151716_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-0151716_36	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0151716_36	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0151716_37	PHROG	phrog_6160	NA	unknown function
UHGV-0151716_38	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0151716_38	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0151716_38	UniRef90	UniRef90_A0A373PZX2	XRE family transcriptional regulator	NA
UHGV-0151716_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0151716_38	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0151716_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0151716_41	UniRef90	UniRef90_A0A373LH84	Fibronectin type-III domain-containing protein	NA
UHGV-0151716_41	eggNOG-mapper	1160721.RBI_II00464	self proteolysis	NA
UHGV-0151716_41	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0151716_41	COG	COG3209	NA	NA
UHGV-0151716_42	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0151716_42	UniRef90	UniRef90_A0A1C6FU95	Endoglucanase E	NA
UHGV-0151716_42	eggNOG-mapper	1160721.RBI_I00576	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0151716_42	Pfam	PF17996	Carbohydrate esterase 2 N-terminal	CE2_N
UHGV-0151716_42	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0151716_42	NCBIFam	NF033846.1	NPXTG-anchored protein	NA
UHGV-0151716_42	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA