UHGV-0151730

Genome information

vOTU vOTU-019498

Genome length 39,455 bps

CDS count 66

Completeness 85.62% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151730
vOTU ID	vOTU-019498
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_467777
BioSample	SAMN06112005
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.8
Jumbo phage	No

Genome content
Genome length	39,455 bps
GC content	52.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	80.41%
Average CDS length	485.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151730_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0151730_1	UniRef90	UniRef90_UPI001A9B476A	helix-turn-helix transcriptional regulator	NA
UHGV-0151730_1	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0151730_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151730_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151730_1	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0151730_7	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0151730_7	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0151730_10	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0151730_10	PHROG	phrog_9562	NA	unknown function
UHGV-0151730_10	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0151730_10	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0151730_10	Pfam	PF19062	NA	DUF5758
UHGV-0151730_10	COG	COG1357	NA	NA
UHGV-0151730_10	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0151730_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0151730_12	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0151730_12	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0151730_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0151730_12	Structural annotation	PF05565	NA	NA
UHGV-0151730_13	PHROG	phrog_14970	NA	unknown function
UHGV-0151730_13	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0151730_13	eggNOG-mapper	411469.EUBHAL_02677	double-strand break repair protein	NA
UHGV-0151730_13	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0151730_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0151730_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0151730_14	PHROG	phrog_1389	NA	unknown function
UHGV-0151730_14	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0151730_14	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0151730_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0151730_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0151730_15	UniRef90	UniRef90_A0A1C7FSG7	Single-stranded DNA-binding protein	NA
UHGV-0151730_15	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0151730_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0151730_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0151730_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0151730_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0151730_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0151730_16	PHROG	phrog_15768	NA	unknown function
UHGV-0151730_16	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0151730_17	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0151730_17	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0151730_17	UniRef90	UniRef90_A0A1C7FRV3	SF4 helicase domain-containing protein	NA
UHGV-0151730_17	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0151730_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0151730_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0151730_17	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0151730_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0151730_19	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0151730_19	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0151730_19	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0151730_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0151730_20	Structural annotation	PF12759	NA	NA
UHGV-0151730_21	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0151730_21	UniRef90	UniRef90_UPI0018997BA1	DNA cytosine methyltransferase	NA
UHGV-0151730_21	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0151730_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0151730_21	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0151730_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0151730_22	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0151730_22	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0151730_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0151730_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0151730_23	PHROG	phrog_10714	NA	unknown function
UHGV-0151730_23	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0151730_23	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0151730_25	PHROG	phrog_25732	NA	unknown function
UHGV-0151730_26	Structural annotation	NF000937	NA	NA
UHGV-0151730_28	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151730_28	UniRef90	UniRef90_UPI0013002188	helix-turn-helix transcriptional regulator	NA
UHGV-0151730_28	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0151730_28	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0151730_30	PHROG	phrog_22543	NA	unknown function
UHGV-0151730_32	PHROG	phrog_8684	NA	unknown function
UHGV-0151730_32	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-0151730_32	eggNOG-mapper	1095737.HMPREF1110_1215	YopX protein	NA
UHGV-0151730_32	Pfam	PF09643	YopX protein	YopX
UHGV-0151730_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0151730_33	PHROG	phrog_924	NA	unknown function
UHGV-0151730_33	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0151730_33	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0151730_33	Pfam	PF04448	NA	DUF551
UHGV-0151730_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0151730_33	Structural annotation	NF041588	NA	NA
UHGV-0151730_35	KOfam	K04487	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	NA
UHGV-0151730_35	PHROG	phrog_12787	NA	unknown function
UHGV-0151730_35	UniRef90	UniRef90_A0A6I7GH67	Cysteine desulfurase	NA
UHGV-0151730_35	eggNOG-mapper	935948.KE386495_gene2114	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	NA
UHGV-0151730_35	PADLOC	SspA_00001	SspA	SSP
UHGV-0151730_35	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0151730_35	COG	COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	NA
UHGV-0151730_35	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA
UHGV-0151730_37	PHROG	phrog_22389	NA	unknown function
UHGV-0151730_37	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0151730_38	UniRef90	UniRef90_UPI0019597901	replication/maintenance protein RepL	NA
UHGV-0151730_41	Structural annotation	PF20549, COG4728	NA	NA
UHGV-0151730_42	eggNOG-mapper	411901.BACCAC_01162	NA	NA
UHGV-0151730_47	PHROG	phrog_13890	NA	unknown function
UHGV-0151730_47	UniRef90	UniRef90_G9YP46	Arc-like DNA-binding protein	NA
UHGV-0151730_47	eggNOG-mapper	1378168.N510_00539	NA	NA
UHGV-0151730_47	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0151730_48	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0151730_49	PHROG	phrog_14333	NA	unknown function
UHGV-0151730_49	UniRef90	UniRef90_UPI00195C9DD0	NA	NA
UHGV-0151730_49	eggNOG-mapper	665956.HMPREF1032_03224	NA	NA
UHGV-0151730_49	Pfam	PF13711	NA	DUF4160
UHGV-0151730_49	Structural annotation	PF13711	NA	NA
UHGV-0151730_50	PHROG	phrog_37898	NA	unknown function
UHGV-0151730_50	UniRef90	UniRef90_UPI001958C7B8	NA	NA
UHGV-0151730_50	eggNOG-mapper	665956.HMPREF1032_03225	NA	NA
UHGV-0151730_50	Pfam	PF10387	NA	DUF2442
UHGV-0151730_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151730_50	Structural annotation	PF10387	NA	NA
UHGV-0151730_51	KOfam	K07496	K07496; putative transposase	NA
UHGV-0151730_51	PHROG	phrog_506	transposase	integration and excision
UHGV-0151730_51	UniRef90	UniRef90_G9YP40	Transposase, IS605 OrfB family	NA
UHGV-0151730_51	eggNOG-mapper	1122217.KB899587_gene168	Probable transposase	NA
UHGV-0151730_51	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0151730_51	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0151730_51	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0151730_51	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0151730_51	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0151730_51	COG	COG0675	Transposase	NA
UHGV-0151730_51	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0151730_52	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0151730_52	PHROG	phrog_19856	NA	unknown function
UHGV-0151730_52	UniRef90	UniRef90_G9YP39	Ftsk gamma domain protein	NA
UHGV-0151730_52	eggNOG-mapper	1226325.HMPREF1548_05785	Restriction endonuclease	NA
UHGV-0151730_52	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0151730_52	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0151730_52	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0151730_52	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0151730_53	PHROG	phrog_3896	NA	unknown function
UHGV-0151730_53	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0151730_54	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0151730_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0151730_54	UniRef90	UniRef90_G9YP38	Site-specific recombinase, phage integrase family	NA
UHGV-0151730_54	eggNOG-mapper	883069.HMPREF9238_00245	Belongs to the 'phage' integrase family. XerC subfamily	NA
UHGV-0151730_54	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0151730_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151730_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0151730_54	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0151730_55	PHROG	phrog_21357	endolysin	lysis
UHGV-0151730_55	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0151730_55	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0151730_55	COG	COG1388	LysM repeat	NA
UHGV-0151730_55	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0151730_56	PHROG	phrog_18218	NA	unknown function
UHGV-0151730_56	eggNOG-mapper	693746.OBV_18280	NA	NA
UHGV-0151730_56	Structural annotation	PF06946	NA	NA
UHGV-0151730_58	PHROG	phrog_937	hemolysin	other
UHGV-0151730_58	eggNOG-mapper	428125.CLOLEP_00170	NA	NA
UHGV-0151730_59	eggNOG-mapper	1120998.AUFC01000016_gene5	alginic acid biosynthetic process	NA
UHGV-0151730_59	COG	COG1511	NA	NA
UHGV-0151730_60	Structural annotation	PF05606, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0151730_61	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0151730_61	UniRef90	UniRef90_K9RSM4	Holliday junction resolvasome, endonuclease subunit	NA
UHGV-0151730_61	eggNOG-mapper	195253.Syn6312_0894	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0151730_61	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0151730_61	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0151730_62	PHROG	phrog_1887	tail protein	tail
UHGV-0151730_62	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0151730_63	PHROG	phrog_19111	NA	unknown function
UHGV-0151730_63	UniRef90	UniRef90_UPI00189979BF	kelch motif-containing protein	NA
UHGV-0151730_63	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0151730_63	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0151730_63	Structural annotation	PF20545, TIGR03000, TIGR03525, COG1262, COG4704	NA	NA
UHGV-0151730_64	Structural annotation	PF19266, PF02010, MF_04116, NF032891, TIGR01633, COG3499, COG3506, COG3291	NA	NA
UHGV-0151730_65	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-0151730_66	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-0151730_66	eggNOG-mapper	457421.CBFG_01651	Putative exonuclease SbcCD, C subunit	NA
UHGV-0151730_66	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA