UHGV-0151878

Genome information

Genome length 28,043 bps

CDS count 41

Completeness 78.87% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151878
vOTU ID	vOTU-027502
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453553
BioSample	SAMN05971692
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.41
Jumbo phage	No

Genome content
Genome length	28,043 bps
GC content	52.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	88.81%
Average CDS length	611.93 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151878_1	KOfam	K03695	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB	NA
UHGV-0151878_1	PHROG	phrog_4871	ATP-dependent protease	other
UHGV-0151878_1	UniRef90	UniRef90_R5EJD1	ATP-dependent chaperone protein ClpB	NA
UHGV-0151878_1	eggNOG-mapper	657322.FPR_14510	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	NA
UHGV-0151878_1	Pfam	PF07724	AAA domain (Cdc48 subfamily)	AAA_2
UHGV-0151878_1	Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	ClpB_D2-small
UHGV-0151878_1	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0151878_2	KOfam	K14059	int; integrase	NA
UHGV-0151878_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0151878_2	UniRef90	UniRef90_A0A3D3Y5E0	Integrase	NA
UHGV-0151878_2	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0151878_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151878_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0151878_2	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0151878_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0151878_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151878_3	UniRef90	UniRef90_UPI001BB478CB	type I restriction endonuclease	NA
UHGV-0151878_3	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0151878_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0151878_3	COG	COG4748	NA	NA
UHGV-0151878_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0151878_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0151878_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151878_4	UniRef90	UniRef90_R6HTL1	DNA-binding helix-turn-helix protein	NA
UHGV-0151878_4	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0151878_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151878_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151878_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151878_7	Structural annotation	PF16857	NA	NA
UHGV-0151878_10	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0151878_10	UniRef90	UniRef90_A0A6L9HEX6	DNA cytosine methyltransferase	NA
UHGV-0151878_10	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0151878_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0151878_10	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0151878_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0151878_13	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0151878_13	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0151878_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0151878_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0151878_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0151878_15	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0151878_15	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0151878_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0151878_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0151878_16	eggNOG-mapper	568816.Acin_1852	NA	NA
UHGV-0151878_16	Structural annotation	PF05037	NA	NA
UHGV-0151878_17	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0151878_17	UniRef90	UniRef90_A0A173Y540	Superfamily II helicase and inactivated derivatives	NA
UHGV-0151878_17	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0151878_17	Pfam	PF06048	NA	DUF927
UHGV-0151878_17	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0151878_17	COG	COG5519	NA	NA
UHGV-0151878_17	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0151878_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0151878_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0151878_18	UniRef90	UniRef90_A0A2U1BEG6	Superfamily II DNA or RNA helicase	NA
UHGV-0151878_18	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0151878_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0151878_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0151878_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0151878_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0151878_18	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0151878_19	PHROG	phrog_3253	NA	unknown function
UHGV-0151878_19	UniRef90	UniRef90_UPI0011773349	resolvase	NA
UHGV-0151878_20	PHROG	phrog_824	NA	unknown function
UHGV-0151878_20	UniRef90	UniRef90_A0A3D0M2W9	VRR-NUC domain-containing protein	NA
UHGV-0151878_20	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0151878_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0151878_20	Structural annotation	PF08774	NA	NA
UHGV-0151878_22	PHROG	phrog_6568	NA	unknown function
UHGV-0151878_23	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-0151878_23	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0151878_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0151878_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0151878_24	UniRef90	UniRef90_A0A6L9H9Q7	Methyltransferase	NA
UHGV-0151878_24	eggNOG-mapper	1321782.HMPREF1986_02265	N-4 methylation of cytosine	NA
UHGV-0151878_24	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0151878_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0151878_24	COG	COG0863	DNA modification methylase	NA
UHGV-0151878_24	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0151878_25	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0151878_25	UniRef90	UniRef90_A0A4Z0Y8T7	Helix-turn-helix domain protein	NA
UHGV-0151878_25	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151878_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0151878_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0151878_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151878_28	UniRef90	UniRef90_A0A1C6FFC2	HNH domain-containing protein	NA
UHGV-0151878_28	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0151878_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151878_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0151878_29	UniRef90	UniRef90_A0A139CWZ4	Phage terminase small subunit	NA
UHGV-0151878_29	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-0151878_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0151878_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0151878_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0151878_30	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0151878_30	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0151878_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0151878_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0151878_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0151878_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0151878_31	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-0151878_31	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0151878_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0151878_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0151878_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0151878_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0151878_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0151878_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0151878_32	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0151878_32	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0151878_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0151878_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0151878_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0151878_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0151878_33	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0151878_33	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0151878_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0151878_33	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0151878_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0151878_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0151878_33	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0151878_34	PHROG	phrog_749	NA	unknown function
UHGV-0151878_34	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0151878_34	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0151878_35	PHROG	phrog_19734	NA	unknown function
UHGV-0151878_35	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0151878_35	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0151878_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0151878_36	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0151878_36	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0151878_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0151878_37	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0151878_37	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0151878_37	Structural annotation	TIGR01725	NA	NA
UHGV-0151878_38	PHROG	phrog_88	major tail protein	tail
UHGV-0151878_38	UniRef90	UniRef90_A0A414B835	Phage tail protein	NA
UHGV-0151878_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0151878_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0151878_40	KOfam	K16308	CIT; citron Rho-interacting kinase [EC:2.7.11.1]	NA
UHGV-0151878_40	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0151878_40	UniRef90	UniRef90_A0A1I5SCZ6	Peptidase family M23	NA
UHGV-0151878_40	eggNOG-mapper	1123314.AUIO01000016_gene849	Phage tail tape measure protein	NA
UHGV-0151878_40	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0151878_40	Structural annotation	PF20155	NA	NA