UHGV-0151947

Genome information

Genome length 31,736 bps

CDS count 44

Completeness 100.00% (complete)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151947
vOTU ID	vOTU-000325
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_469329
BioSample	SAMN06111973
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.65
Jumbo phage	No

Genome content
Genome length	31,736 bps
GC content	49.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.62%
Average CDS length	655.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151947_1	PHROG	phrog_372	tail protein	tail
UHGV-0151947_1	UniRef90	UniRef90_R6GII0	Fibronectin type-III domain-containing protein	NA
UHGV-0151947_1	eggNOG-mapper	908340.HMPREF9406_0178	NA	NA
UHGV-0151947_1	Pfam	PF05895	NA	DUF859
UHGV-0151947_1	COG	COG4675	Phage tail collar domain	NA
UHGV-0151947_1	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0151947_2	PHROG	phrog_19280	NA	unknown function
UHGV-0151947_2	UniRef90	UniRef90_UPI00164B6084	NA	NA
UHGV-0151947_2	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0151947_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0151947_2	Pfam	PF19789	NA	DUF6273
UHGV-0151947_2	Structural annotation	PF19789, PF10651	NA	NA
UHGV-0151947_3	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0151947_3	UniRef90	UniRef90_A0A4S2HBV4	Four helix bundle protein	NA
UHGV-0151947_3	eggNOG-mapper	1235797.C816_02835	NA	NA
UHGV-0151947_3	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0151947_4	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0151947_4	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0151947_4	UniRef90	UniRef90_R6GLF4	Reverse transcriptase domain-containing protein	NA
UHGV-0151947_4	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0151947_4	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0151947_4	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0151947_4	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0151947_4	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0151947_5	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0151947_5	UniRef90	UniRef90_UPI00164B563B	phage tail assembly chaperone	NA
UHGV-0151947_5	eggNOG-mapper	269482.Bcep1808_1285	Phage tail assembly chaperone protein	NA
UHGV-0151947_5	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0151947_5	Structural annotation	PF16778	NA	NA
UHGV-0151947_7	PHROG	phrog_4105	NA	unknown function
UHGV-0151947_7	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0151947_8	PHROG	phrog_263	holin	lysis
UHGV-0151947_8	UniRef90	UniRef90_A0A1F8V0V3	Phage holin	NA
UHGV-0151947_8	eggNOG-mapper	458233.MCCL_1512	SPP1 phage holin	NA
UHGV-0151947_8	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0151947_8	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0151947_8	Structural annotation	PF04688	NA	NA
UHGV-0151947_9	KOfam	K03749	dedD; DedD protein	NA
UHGV-0151947_9	PHROG	phrog_15001	endolysin	lysis
UHGV-0151947_9	UniRef90	UniRef90_R6GU62	Sporulation domain-containing protein	NA
UHGV-0151947_9	eggNOG-mapper	1216932.CM240_0690	Sporulation related domain	NA
UHGV-0151947_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0151947_9	Pfam	PF05036	SPOR domain	SPOR
UHGV-0151947_9	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0151947_9	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0151947_9	Structural annotation	PF05036, PF08230, PF01510, TIGR00413, COG5632	NA	NA
UHGV-0151947_10	Structural annotation	TIGR01725	NA	NA
UHGV-0151947_11	UniRef90	UniRef90_UPI00164AD29E	HIRAN domain-containing protein	NA
UHGV-0151947_11	eggNOG-mapper	1160721.RBI_I01605	NA	NA
UHGV-0151947_12	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0151947_12	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0151947_12	UniRef90	UniRef90_A0A3E4UUW7	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0151947_12	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0151947_12	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0151947_12	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0151947_12	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0151947_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0151947_13	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0151947_13	UniRef90	UniRef90_R6GVF3	HicB-like domain-containing protein	NA
UHGV-0151947_13	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0151947_13	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0151947_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0151947_13	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0151947_14	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0151947_14	PHROG	phrog_4646	transposase	integration and excision
UHGV-0151947_14	UniRef90	UniRef90_R6GLE4	Integrase catalytic domain-containing protein	NA
UHGV-0151947_14	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0151947_14	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0151947_14	Pfam	PF00665	Integrase core domain	rve
UHGV-0151947_14	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0151947_14	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0151947_14	Structural annotation	PF13358, PF13384, NF033563, COG2826	NA	NA
UHGV-0151947_15	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0151947_15	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0151947_15	UniRef90	UniRef90_R6GVJ8	Transposase	NA
UHGV-0151947_15	eggNOG-mapper	1203606.HMPREF1526_01866	Helix-turn-helix domain	NA
UHGV-0151947_15	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0151947_15	Structural annotation	PF04218	NA	NA
UHGV-0151947_16	PHROG	phrog_4068	NA	unknown function
UHGV-0151947_16	Structural annotation	PF06657	NA	NA
UHGV-0151947_17	PHROG	phrog_421	NA	unknown function
UHGV-0151947_17	UniRef90	UniRef90_UPI000F05D0D4	NA	NA
UHGV-0151947_17	eggNOG-mapper	411470.RUMGNA_02039	NA	NA
UHGV-0151947_20	Structural annotation	PF13613	NA	NA
UHGV-0151947_21	PHROG	phrog_9958	NA	unknown function
UHGV-0151947_21	UniRef90	UniRef90_R6GLI1	NA	NA
UHGV-0151947_21	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0151947_21	Pfam	PF19789	NA	DUF6273
UHGV-0151947_21	Structural annotation	PF19789	NA	NA
UHGV-0151947_22	PHROG	phrog_22040	NA	unknown function
UHGV-0151947_22	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0151947_23	PHROG	phrog_24518	NA	unknown function
UHGV-0151947_23	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0151947_24	PHROG	phrog_19349	NA	unknown function
UHGV-0151947_24	UniRef90	UniRef90_R6GVI7	SLT domain-containing protein	NA
UHGV-0151947_24	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0151947_24	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0151947_24	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0151947_24	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0151947_25	PHROG	phrog_3136	NA	unknown function
UHGV-0151947_25	UniRef90	UniRef90_A0A4R0UY31	ASCH domain-containing protein	NA
UHGV-0151947_25	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0151947_25	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0151947_25	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0151947_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0151947_26	eggNOG-mapper	1160721.RBI_I01590	NA	NA
UHGV-0151947_26	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0151947_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151947_28	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0151947_28	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0151947_28	Pfam	PF07374	NA	DUF1492
UHGV-0151947_28	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0151947_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0151947_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151947_29	UniRef90	UniRef90_UPI00164BCC03	HNH endonuclease	NA
UHGV-0151947_29	eggNOG-mapper	315730.BcerKBAB4_3433	HNH endonuclease	NA
UHGV-0151947_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0151947_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0151947_30	Structural annotation	PF11305, MF_01360, NF010236	NA	NA
UHGV-0151947_31	PHROG	phrog_1066	NA	unknown function
UHGV-0151947_31	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-0151947_31	eggNOG-mapper	1160721.RBI_I01586	NA	NA
UHGV-0151947_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0151947_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0151947_32	UniRef90	UniRef90_R6GIJ2	Terminase	NA
UHGV-0151947_32	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0151947_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0151947_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0151947_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0151947_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0151947_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0151947_33	UniRef90	UniRef90_R6HH15	HK97 family phage portal protein	NA
UHGV-0151947_33	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0151947_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0151947_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0151947_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0151947_34	KOfam	K06904	NA	NA
UHGV-0151947_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0151947_34	UniRef90	UniRef90_R6GVH9	Phage prohead protease HK97 family	NA
UHGV-0151947_34	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0151947_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0151947_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0151947_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0151947_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0151947_35	UniRef90	UniRef90_R6GU80	Phage major capsid protein family	NA
UHGV-0151947_35	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0151947_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0151947_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0151947_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0151947_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0151947_36	PHROG	phrog_5223	neck protein	connector
UHGV-0151947_36	UniRef90	UniRef90_R6GII7	Putative phage DNA packaging-like protein	NA
UHGV-0151947_36	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0151947_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0151947_36	Structural annotation	TIGR01560	NA	NA
UHGV-0151947_37	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0151947_37	UniRef90	UniRef90_R6HH08	Putative phage head-tail adaptor	NA
UHGV-0151947_37	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-0151947_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0151947_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0151947_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0151947_38	PHROG	phrog_957	head protein	head and packaging
UHGV-0151947_38	Structural annotation	PF11367	NA	NA
UHGV-0151947_39	PHROG	phrog_885	major tail protein	tail
UHGV-0151947_39	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0151947_39	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0151947_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0151947_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0151947_41	UniRef90	UniRef90_R6GII4	Immunity-specific protein Beta241	NA
UHGV-0151947_41	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0151947_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0151947_41	Structural annotation	PF06791, COG3941	NA	NA
UHGV-0151947_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0151947_42	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0151947_42	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0151947_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0151947_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0151947_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0151947_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0151947_43	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0151947_43	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0151947_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0151947_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0151947_43	COG	COG4926	Phage-related protein	NA
UHGV-0151947_43	Structural annotation	PF14594, PF04862, TIGR01665, NF033675, COG4926, COG4935	NA	NA
UHGV-0151947_44	PHROG	phrog_372	tail protein	tail
UHGV-0151947_44	eggNOG-mapper	1507.HMPREF0262_01190	NA	NA
UHGV-0151947_44	COG	COG4675	Phage tail collar domain	NA