UHGV-0151978

Genome information

Genome length 44,740 bps

CDS count 59

Completeness 58.39% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151978
vOTU ID	vOTU-027508
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_480188
BioSample	SAMN06115440
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.97
Jumbo phage	No

Genome content
Genome length	44,740 bps
GC content	39.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	86.27%
Average CDS length	655.78 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151978_1	PHROG	phrog_9915	NA	unknown function
UHGV-0151978_1	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0151978_2	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0151978_2	PHROG	phrog_18190	NA	unknown function
UHGV-0151978_2	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0151978_2	eggNOG-mapper	428125.CLOLEP_00457	endo-1,4-beta-xylanase activity	NA
UHGV-0151978_2	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0151978_2	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0151978_2	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0151978_2	Structural annotation	PF13306, PF07523, PF05113, NF033848, NF040978, COG3500	NA	NA
UHGV-0151978_3	PHROG	phrog_1194	NA	unknown function
UHGV-0151978_3	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0151978_3	Pfam	PF20458	NA	DUF6711
UHGV-0151978_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0151978_4	PHROG	phrog_1204	tail protein	tail
UHGV-0151978_4	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0151978_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0151978_5	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0151978_5	UniRef90	UniRef90_UPI000CF201CD	GIY-YIG nuclease family protein	NA
UHGV-0151978_5	eggNOG-mapper	926559.JoomaDRAFT_1090	Intron encoded nuclease repeat motif	NA
UHGV-0151978_5	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0151978_5	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0151978_5	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0151978_5	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0151978_5	Structural annotation	PF19835, TIGR01453, COG2827	NA	NA
UHGV-0151978_6	PHROG	phrog_28918	NA	unknown function
UHGV-0151978_6	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0151978_6	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0151978_7	eggNOG-mapper	469596.HMPREF9488_01312	NA	NA
UHGV-0151978_9	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0151978_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0151978_10	PHROG	phrog_443	holin	lysis
UHGV-0151978_10	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-0151978_10	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0151978_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0151978_10	Structural annotation	PF16945	NA	NA
UHGV-0151978_11	Structural annotation	PF05657	NA	NA
UHGV-0151978_12	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0151978_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0151978_14	UniRef90	UniRef90_A0A1C6L0B1	NA	NA
UHGV-0151978_14	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0151978_14	Structural annotation	PF10651, PF19789, COG2372	NA	NA
UHGV-0151978_15	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0151978_15	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0151978_17	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0151978_18	PHROG	phrog_1233	NA	unknown function
UHGV-0151978_18	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0151978_18	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0151978_21	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0151978_22	PHROG	phrog_16490	NA	unknown function
UHGV-0151978_22	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0151978_24	PHROG	phrog_21718	NA	unknown function
UHGV-0151978_24	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0151978_25	UniRef90	UniRef90_A0A412EMQ9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0151978_25	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0151978_25	Structural annotation	PF04545, MF_00674, NF001073, COG1595	NA	NA
UHGV-0151978_26	PHROG	phrog_937	hemolysin	other
UHGV-0151978_27	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0151978_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0151978_28	UniRef90	UniRef90_R0C0Z5	S-l_SbsC_C domain-containing protein	NA
UHGV-0151978_28	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0151978_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0151978_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0151978_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-0151978_29	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0151978_29	Structural annotation	PF02924	NA	NA
UHGV-0151978_30	Structural annotation	PF14265	NA	NA
UHGV-0151978_31	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0151978_31	UniRef90	UniRef90_D7GWD5	Phage Mu protein F like protein	NA
UHGV-0151978_31	eggNOG-mapper	1329516.JPST01000018_gene2643	cell adhesion	NA
UHGV-0151978_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0151978_31	COG	COG2369	NA	NA
UHGV-0151978_31	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0151978_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0151978_32	UniRef90	UniRef90_A0A412EMP0	Phage portal protein	NA
UHGV-0151978_32	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0151978_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151978_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0151978_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151978_33	UniRef90	UniRef90_A0A412EN86	NA	NA
UHGV-0151978_33	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-0151978_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0151978_33	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0151978_34	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0151978_34	UniRef90	UniRef90_A0A7X2P7N6	Phage terminase large subunit	NA
UHGV-0151978_34	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0151978_34	COG	COG5410	NA	NA
UHGV-0151978_34	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0151978_35	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0151978_35	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0151978_35	UniRef90	UniRef90_UPI001898CD6A	RtcB family protein	NA
UHGV-0151978_35	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0151978_35	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0151978_35	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0151978_35	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0151978_36	PHROG	phrog_12728	NA	unknown function
UHGV-0151978_36	UniRef90	UniRef90_A0A516KMW1	Putative membrane lipoprotein	NA
UHGV-0151978_36	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0151978_39	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0151978_47	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0151978_49	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0151978_51	UniRef90	UniRef90_A0A6N2TPV5	RHH_1 domain-containing protein	NA
UHGV-0151978_51	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0151978_53	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0151978_54	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-0151978_54	UniRef90	UniRef90_UPI0015707911	CRISPR-associated protein Cas5	NA
UHGV-0151978_54	eggNOG-mapper	1069534.LRC_10220	CRISPR-associated protein Cas5	NA
UHGV-0151978_54	PADLOC	cd09658	CAS-I-B; effector_G5	CRISPR-CAS
UHGV-0151978_54	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-0151978_54	Structural annotation	PF09704, TIGR01895, COG1688	NA	NA
UHGV-0151978_58	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0151978_58	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0151978_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151978_59	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0151978_59	UniRef90	UniRef90_UPI0018994431	helix-turn-helix transcriptional regulator	NA
UHGV-0151978_59	eggNOG-mapper	1235790.C805_02349	Transcriptional regulator	NA
UHGV-0151978_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0151978_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0151978_59	Structural annotation	PF13443, NF000090, COG3655	NA	NA