UHGV-0151990

Genome information

Genome length 35,324 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0151990
vOTU ID	vOTU-046160
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_470476
BioSample	SAMN06112066
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.2
Jumbo phage	No

Genome content
Genome length	35,324 bps
GC content	60.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.34%
Average CDS length	675.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0151990_1	PHROG	phrog_2412	NA	unknown function
UHGV-0151990_1	UniRef90	UniRef90_A0A6Z7A1E4	Stress-induced protein	NA
UHGV-0151990_1	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0151990_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0151990_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0151990_2	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-0151990_2	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0151990_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0151990_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0151990_2	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0151990_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0151990_3	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0151990_3	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0151990_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0151990_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0151990_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0151990_4	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-0151990_4	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0151990_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0151990_4	COG	COG2369	NA	NA
UHGV-0151990_4	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0151990_5	PHROG	phrog_34144	NA	unknown function
UHGV-0151990_5	eggNOG-mapper	742742.HMPREF9452_00763	NA	NA
UHGV-0151990_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0151990_7	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0151990_7	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0151990_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0151990_7	Structural annotation	PF06810	NA	NA
UHGV-0151990_8	PHROG	phrog_267	major head protein	head and packaging
UHGV-0151990_8	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0151990_8	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0151990_8	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0151990_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0151990_10	PHROG	phrog_3366	NA	unknown function
UHGV-0151990_10	Pfam	PF20536	NA	DUF6751
UHGV-0151990_10	Structural annotation	PF20536	NA	NA
UHGV-0151990_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0151990_11	UniRef90	UniRef90_D4K441	Minor capsid	NA
UHGV-0151990_11	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0151990_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0151990_11	Structural annotation	PF11114	NA	NA
UHGV-0151990_12	PHROG	phrog_3266	tail completion	connector
UHGV-0151990_12	UniRef90	UniRef90_A0A6B4JS53	Chloramphenicol resistance protein	NA
UHGV-0151990_12	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-0151990_12	Structural annotation	PF12691	NA	NA
UHGV-0151990_13	PHROG	phrog_820	major tail protein	tail
UHGV-0151990_13	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0151990_13	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0151990_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0151990_14	Structural annotation	PF20378	NA	NA
UHGV-0151990_15	PHROG	phrog_706	NA	unknown function
UHGV-0151990_15	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0151990_15	eggNOG-mapper	663278.Ethha_0101	Bacteriophage Gp15 protein	NA
UHGV-0151990_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0151990_15	Structural annotation	PF06854	NA	NA
UHGV-0151990_16	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0151990_16	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0151990_16	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0151990_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0151990_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0151990_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0151990_16	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0151990_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0151990_17	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0151990_17	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0151990_18	PHROG	phrog_18110	NA	unknown function
UHGV-0151990_18	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0151990_18	eggNOG-mapper	272562.CA_C1879	Phage minor structural protein	NA
UHGV-0151990_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0151990_18	COG	COG4926	Phage-related protein	NA
UHGV-0151990_18	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0151990_19	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0151990_19	COG	COG5492	NA	NA
UHGV-0151990_20	PHROG	phrog_2310	NA	unknown function
UHGV-0151990_21	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0151990_21	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0151990_23	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0151990_23	PHROG	phrog_894	endolysin	lysis
UHGV-0151990_23	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0151990_23	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0151990_23	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0151990_23	COG	COG3108	NA	NA
UHGV-0151990_23	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0151990_25	PHROG	phrog_1863	NA	unknown function
UHGV-0151990_25	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0151990_26	PHROG	phrog_263	holin	lysis
UHGV-0151990_26	UniRef90	UniRef90_A0A2A7AXH0	Phage holin	NA
UHGV-0151990_26	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-0151990_26	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0151990_26	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0151990_26	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0151990_27	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0151990_27	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-0151990_27	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0151990_27	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0151990_27	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0151990_27	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0151990_28	KOfam	K14059	int; integrase	NA
UHGV-0151990_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0151990_28	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-0151990_28	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0151990_28	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0151990_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0151990_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0151990_28	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0151990_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0151990_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0151990_30	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-0151990_30	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0151990_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0151990_30	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0151990_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0151990_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0151990_31	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0151990_34	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0151990_34	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0151990_34	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0151990_35	PHROG	phrog_32852	NA	unknown function
UHGV-0151990_38	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0151990_41	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-0151990_41	Structural annotation	PF12957	NA	NA
UHGV-0151990_42	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0151990_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0151990_44	PHROG	phrog_1366	NA	unknown function
UHGV-0151990_44	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0151990_44	eggNOG-mapper	748224.HMPREF9436_01458	AAA domain	NA
UHGV-0151990_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0151990_44	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0151990_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0151990_45	Structural annotation	PF03838, MF_00130, TIGR00648, COG3331	NA	NA
UHGV-0151990_46	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0151990_46	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0151990_46	UniRef90	UniRef90_E2ZIG6	Helicase C-terminal domain protein	NA
UHGV-0151990_46	eggNOG-mapper	748224.HMPREF9436_01460	Type III restriction protein res subunit	NA
UHGV-0151990_46	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0151990_46	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0151990_46	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0151990_46	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0151990_46	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0151990_47	eggNOG-mapper	1382304.JNIL01000001_gene3512	NA	NA
UHGV-0151990_47	Structural annotation	PF05037	NA	NA
UHGV-0151990_48	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0151990_48	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0151990_48	UniRef90	UniRef90_E2ZIG8	Nucleoside triphosphatase, D5 family	NA
UHGV-0151990_48	eggNOG-mapper	748224.HMPREF9436_01462	Phage plasmid primase, P4 family	NA
UHGV-0151990_48	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0151990_48	Pfam	PF19263	NA	DUF5906
UHGV-0151990_48	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0151990_48	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0151990_48	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0151990_48	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0151990_49	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0151990_49	UniRef90	UniRef90_A0A3A6JSY6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0151990_49	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0151990_49	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA