UHGV-0152050

Genome information

Genome length 34,292 bps

CDS count 46

Completeness 96.86% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152050
vOTU ID	vOTU-071645
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_449878
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	2.94
Jumbo phage	No

Genome content
Genome length	34,292 bps
GC content	40.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.22%
Average CDS length	677.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152050_1	KOfam	K03484	scrR; LacI family transcriptional regulator, sucrose operon repressor	NA
UHGV-0152050_1	PHROG	phrog_11145	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152050_1	UniRef90	UniRef90_A0A564UKH0	HTH-type transcriptional repressor CytR	NA
UHGV-0152050_1	eggNOG-mapper	1410665.JNKR01000016_gene941	helix_turn _helix lactose operon repressor	NA
UHGV-0152050_1	Pfam	PF00356	Bacterial regulatory proteins, lacI family	LacI
UHGV-0152050_1	Pfam	PF13377	Periplasmic binding protein-like domain	Peripla_BP_3
UHGV-0152050_1	COG	COG1609	DNA-binding transcriptional regulator, LacI/PurR family	NA
UHGV-0152050_1	Structural annotation	PF00532, PF00356, MF_01277, NF007743, COG1609	NA	NA
UHGV-0152050_2	KOfam	K02810	scrA, sacP, sacX, ptsS; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]	NA
UHGV-0152050_2	UniRef90	UniRef90_A0A564UJT5	Negative regulator of SacY activity	NA
UHGV-0152050_2	eggNOG-mapper	866895.HBHAL_2252	phosphotransferase system, EIIB	NA
UHGV-0152050_2	Pfam	PF00367	phosphotransferase system, EIIB	PTS_EIIB
UHGV-0152050_2	Pfam	PF02378	Phosphotransferase system, EIIC	PTS_EIIC
UHGV-0152050_2	NCBIFam	TIGR00826.1	glucose PTS transporter subunit EIIB	NA
UHGV-0152050_2	COG	COG1263	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific	NA
UHGV-0152050_3	KOfam	K01193	INV, sacA; beta-fructofuranosidase [EC:3.2.1.26]	NA
UHGV-0152050_3	PHROG	phrog_21583	levanase	moron, auxiliary metabolic gene and host takeover
UHGV-0152050_3	UniRef90	UniRef90_A0A564UJU5	Sucrose-6-phosphate hydrolase	NA
UHGV-0152050_3	eggNOG-mapper	1517681.HW45_13620	COG1621 Beta-fructosidases (levanase invertase)	NA
UHGV-0152050_3	Pfam	PF00251	Glycosyl hydrolases family 32 N-terminal domain	Glyco_hydro_32N
UHGV-0152050_3	Pfam	PF08244	Glycosyl hydrolases family 32 C terminal	Glyco_hydro_32C
UHGV-0152050_3	NCBIFam	TIGR01322.1	sucrose-6-phosphate hydrolase	NA
UHGV-0152050_3	COG	COG1621	Sucrose-6-phosphate hydrolase SacC, GH32 family	NA
UHGV-0152050_4	KOfam	K14059	int; integrase	NA
UHGV-0152050_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0152050_4	UniRef90	UniRef90_B0G4D9	Site-specific recombinase, phage integrase family	NA
UHGV-0152050_4	eggNOG-mapper	411461.DORFOR_01126	Phage integrase family	NA
UHGV-0152050_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0152050_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152050_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152050_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0152050_5	Structural annotation	PF12869, PF01336, NF012035, COG4085	NA	NA
UHGV-0152050_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0152050_6	UniRef90	UniRef90_B0G4E1	DNA-binding helix-turn-helix protein	NA
UHGV-0152050_6	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0152050_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152050_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0152050_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0152050_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152050_8	UniRef90	UniRef90_UPI001D085CC2	helix-turn-helix domain-containing protein	NA
UHGV-0152050_8	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152050_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152050_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152050_8	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0152050_12	PHROG	phrog_36464	NA	unknown function
UHGV-0152050_12	eggNOG-mapper	411461.DORFOR_01136	NA	NA
UHGV-0152050_12	Structural annotation	PF09035	NA	NA
UHGV-0152050_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0152050_14	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0152050_14	Structural annotation	PF01446	NA	NA
UHGV-0152050_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0152050_16	UniRef90	UniRef90_A0A1M6MV17	Ribonuclease HI	NA
UHGV-0152050_16	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0152050_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0152050_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0152050_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152050_18	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0152050_18	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0152050_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152050_18	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0152050_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0152050_19	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0152050_19	UniRef90	UniRef90_B0G4F7	ParB-like protein	NA
UHGV-0152050_19	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0152050_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0152050_19	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0152050_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0152050_19	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0152050_20	PHROG	phrog_7566	NA	unknown function
UHGV-0152050_20	eggNOG-mapper	411461.DORFOR_01145	NA	NA
UHGV-0152050_21	Structural annotation	PF08169, MF_01549, TIGR00405	NA	NA
UHGV-0152050_22	PHROG	phrog_32748	NA	unknown function
UHGV-0152050_22	eggNOG-mapper	411461.DORFOR_01147	COG NOG28949 non supervised orthologous group	NA
UHGV-0152050_22	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0152050_22	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0152050_23	PHROG	phrog_31991	NA	unknown function
UHGV-0152050_24	PHROG	phrog_7024	NA	unknown function
UHGV-0152050_24	eggNOG-mapper	693746.OBV_41700	NA	NA
UHGV-0152050_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152050_25	UniRef90	UniRef90_R6S8T9	Sigma70_r4 domain-containing protein	NA
UHGV-0152050_25	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-0152050_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0152050_25	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0152050_28	UniRef90	UniRef90_A0A1Y4H070	Chemotaxis protein	NA
UHGV-0152050_28	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0152050_28	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0152050_29	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0152050_29	eggNOG-mapper	1235798.C817_04580	HNH nucleases	NA
UHGV-0152050_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0152050_30	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0152050_30	UniRef90	UniRef90_UPI001A918125	P27 family phage terminase small subunit	NA
UHGV-0152050_30	eggNOG-mapper	913865.DOT_5637	phage terminase small subunit	NA
UHGV-0152050_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0152050_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0152050_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0152050_31	UniRef90	UniRef90_A0A3E5GPH3	Terminase large subunit	NA
UHGV-0152050_31	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0152050_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0152050_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0152050_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0152050_31	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0152050_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0152050_32	UniRef90	UniRef90_A0A3E5GPS9	Phage portal protein	NA
UHGV-0152050_32	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0152050_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0152050_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0152050_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0152050_32	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0152050_33	KOfam	K06904	NA	NA
UHGV-0152050_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0152050_33	UniRef90	UniRef90_A0A3E5GPG5	HK97 family phage prohead protease	NA
UHGV-0152050_33	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0152050_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0152050_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0152050_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0152050_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0152050_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152050_34	UniRef90	UniRef90_A0A3E5GPH2	Phage major capsid protein	NA
UHGV-0152050_34	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0152050_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152050_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152050_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152050_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152050_35	PHROG	phrog_2550	NA	unknown function
UHGV-0152050_35	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0152050_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0152050_36	PHROG	phrog_19734	NA	unknown function
UHGV-0152050_36	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0152050_36	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0152050_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0152050_37	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0152050_37	Structural annotation	PF05657	NA	NA
UHGV-0152050_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0152050_38	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0152050_38	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0152050_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0152050_38	Structural annotation	TIGR01725	NA	NA
UHGV-0152050_39	PHROG	phrog_88	major tail protein	tail
UHGV-0152050_39	UniRef90	UniRef90_A0A3E5GPH8	Phage tail protein	NA
UHGV-0152050_39	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0152050_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0152050_40	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0152050_40	Structural annotation	PF11836	NA	NA
UHGV-0152050_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0152050_41	UniRef90	UniRef90_A0A3E5GPN2	PhageMin_Tail domain-containing protein	NA
UHGV-0152050_41	eggNOG-mapper	1235798.C817_04592	Phage-related minor tail protein	NA
UHGV-0152050_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0152050_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0152050_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0152050_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0152050_42	UniRef90	UniRef90_A0A3E5GPI4	Phage tail protein	NA
UHGV-0152050_42	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0152050_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0152050_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0152050_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0152050_43	PHROG	phrog_13289	tail protein	tail
UHGV-0152050_43	UniRef90	UniRef90_R9MV22	Phage minor structural protein	NA
UHGV-0152050_43	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0152050_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0152050_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0152050_43	COG	COG4926	Phage-related protein	NA
UHGV-0152050_45	PHROG	phrog_16164	NA	unknown function
UHGV-0152050_45	eggNOG-mapper	411476.BACOVA_04955	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0152050_45	Pfam	PF16255	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL_lke
UHGV-0152050_45	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0152050_46	eggNOG-mapper	794903.OPIT5_29910	NA	NA