UHGV-0152101

Genome information

Genome length 44,170 bps

CDS count 58

Completeness 85.89% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152101
vOTU ID	vOTU-027515
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_485391
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.56
Jumbo phage	No

Genome content
Genome length	44,170 bps
GC content	41.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.54%
Average CDS length	700.66 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152101_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0152101_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0152101_1	UniRef90	UniRef90_R6DN79	Recombinase	NA
UHGV-0152101_1	eggNOG-mapper	1105031.HMPREF1141_2502	Resolvase, N terminal domain	NA
UHGV-0152101_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0152101_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0152101_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0152101_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0152101_2	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0152101_2	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0152101_2	UniRef90	UniRef90_A0A351F886	DNA translocase FtsK (Fragment)	NA
UHGV-0152101_2	eggNOG-mapper	663278.Ethha_1393	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0152101_2	PADLOC	SspH_00004	SspH	SSP
UHGV-0152101_2	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0152101_2	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0152101_2	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0152101_2	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0152101_3	UniRef90	UniRef90_R5YHC1	Ribosomal protein L7/L12	NA
UHGV-0152101_3	eggNOG-mapper	1280696.ATVY01000086_gene2001	NA	NA
UHGV-0152101_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0152101_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0152101_4	UniRef90	UniRef90_A0A350XUL3	Repressor LexA	NA
UHGV-0152101_4	eggNOG-mapper	1111454.HMPREF1250_0782	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152101_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152101_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0152101_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152101_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0152101_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0152101_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0152101_5	UniRef90	UniRef90_UPI001DCF6789	helix-turn-helix domain-containing protein	NA
UHGV-0152101_5	eggNOG-mapper	1688.BCUN_1339	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152101_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152101_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152101_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152101_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0152101_6	UniRef90	UniRef90_A0A355KXV0	NA	NA
UHGV-0152101_6	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0152101_6	Pfam	PF05339	NA	DUF739
UHGV-0152101_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0152101_8	PHROG	phrog_26314	NA	unknown function
UHGV-0152101_9	PHROG	phrog_22529	NA	unknown function
UHGV-0152101_9	UniRef90	UniRef90_A0A355KXV5	3D domain-containing protein	NA
UHGV-0152101_9	eggNOG-mapper	537007.BLAHAN_05080	3D domain	NA
UHGV-0152101_9	Pfam	PF06725	3D domain	3D
UHGV-0152101_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0152101_9	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0152101_11	PHROG	phrog_674	NA	unknown function
UHGV-0152101_11	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0152101_11	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0152101_11	Pfam	PF07083	NA	DUF1351
UHGV-0152101_11	Structural annotation	PF07083	NA	NA
UHGV-0152101_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0152101_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152101_12	UniRef90	UniRef90_A0A355KWE4	Recombinase	NA
UHGV-0152101_12	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0152101_12	Pfam	PF03837	RecT family	RecT
UHGV-0152101_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0152101_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0152101_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0152101_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0152101_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0152101_13	UniRef90	UniRef90_A0A355KXN6	Lactamase_B domain-containing protein	NA
UHGV-0152101_13	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0152101_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0152101_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0152101_13	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0152101_14	PHROG	phrog_398	NA	unknown function
UHGV-0152101_14	UniRef90	UniRef90_UPI001E4CD732	putative HNHc nuclease	NA
UHGV-0152101_14	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0152101_14	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0152101_14	Structural annotation	PF16784	NA	NA
UHGV-0152101_15	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0152101_15	UniRef90	UniRef90_A0A355KVK1	NA	NA
UHGV-0152101_15	eggNOG-mapper	755731.Clo1100_1141	NA	NA
UHGV-0152101_15	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0152101_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0152101_15	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0152101_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0152101_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0152101_16	UniRef90	UniRef90_A0A355KVR8	AAA domain-containing protein	NA
UHGV-0152101_16	eggNOG-mapper	1473546.CH76_01850	IstB-like ATP binding protein	NA
UHGV-0152101_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0152101_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0152101_16	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0152101_17	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0152101_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152101_17	UniRef90	UniRef90_R6E553	DNA methylase family protein	NA
UHGV-0152101_17	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0152101_17	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0152101_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0152101_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152101_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0152101_17	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0152101_20	PHROG	phrog_38338	NA	unknown function
UHGV-0152101_20	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0152101_20	eggNOG-mapper	665956.HMPREF1032_03098	NA	NA
UHGV-0152101_20	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0152101_21	PHROG	phrog_8470	NA	unknown function
UHGV-0152101_21	UniRef90	UniRef90_A0A7G8TD95	PcfJ domain-containing protein	NA
UHGV-0152101_21	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-0152101_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0152101_21	Structural annotation	PF14284	NA	NA
UHGV-0152101_22	PHROG	phrog_3253	NA	unknown function
UHGV-0152101_22	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0152101_22	eggNOG-mapper	272563.CD630_29420	NA	NA
UHGV-0152101_23	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0152101_23	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0152101_23	UniRef90	UniRef90_A0A349DE48	Beta sliding clamp	NA
UHGV-0152101_23	eggNOG-mapper	1235793.C809_02201	DNA polymerase III beta subunit	NA
UHGV-0152101_23	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0152101_23	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0152101_23	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0152101_23	Structural annotation	PF02768, PF02767, MF_04161, TIGR00663, COG0592	NA	NA
UHGV-0152101_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152101_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152101_24	UniRef90	UniRef90_A0A355KXP4	Single-stranded DNA-binding protein	NA
UHGV-0152101_24	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0152101_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152101_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152101_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152101_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152101_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0152101_27	PHROG	phrog_4973	NA	unknown function
UHGV-0152101_27	UniRef90	UniRef90_R5Y7B1	Conserved domain protein	NA
UHGV-0152101_27	eggNOG-mapper	339671.Asuc_1218	Helix-turn-helix domain	NA
UHGV-0152101_27	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0152101_27	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0152101_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152101_28	UniRef90	UniRef90_A0A522K775	NA	NA
UHGV-0152101_28	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0152101_28	Pfam	PF06356	NA	DUF1064
UHGV-0152101_28	Structural annotation	PF06356	NA	NA
UHGV-0152101_29	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0152101_29	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0152101_29	UniRef90	UniRef90_R5YVN2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0152101_29	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0152101_29	Pfam	PF00692	dUTPase	dUTPase
UHGV-0152101_29	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0152101_29	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0152101_29	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0152101_31	PHROG	phrog_8684	NA	unknown function
UHGV-0152101_31	UniRef90	UniRef90_A0A355KXQ4	YopX domain-containing protein	NA
UHGV-0152101_31	eggNOG-mapper	673837.D2IZS1_9CAUD	YopX protein	NA
UHGV-0152101_31	Pfam	PF09643	YopX protein	YopX
UHGV-0152101_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0152101_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0152101_36	PHROG	phrog_1558	NA	unknown function
UHGV-0152101_36	UniRef90	UniRef90_A0A2N5P3K0	HTH_11 domain-containing protein	NA
UHGV-0152101_36	eggNOG-mapper	665956.HMPREF1032_03078	NA	NA
UHGV-0152101_38	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0152101_38	UniRef90	UniRef90_A0A4R4D079	Terminase	NA
UHGV-0152101_38	eggNOG-mapper	457412.RSAG_04668	NA	NA
UHGV-0152101_38	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0152101_38	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0152101_38	COG	COG5484	NA	NA
UHGV-0152101_38	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0152101_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152101_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0152101_39	UniRef90	UniRef90_A0A349DCJ8	PBSX family phage terminase large subunit	NA
UHGV-0152101_39	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-0152101_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0152101_39	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0152101_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152101_40	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0152101_40	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0152101_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152101_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152101_41	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0152101_41	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0152101_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152101_41	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0152101_41	COG	COG2369	NA	NA
UHGV-0152101_41	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0152101_42	PHROG	phrog_1865	NA	unknown function
UHGV-0152101_42	eggNOG-mapper	1582156.A0A0A8WJ56_9CAUD	NA	NA
UHGV-0152101_42	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0152101_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0152101_43	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0152101_43	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0152101_43	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0152101_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0152101_44	UniRef90	UniRef90_A0A355KUP4	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0152101_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0152101_44	Structural annotation	PF06810	NA	NA
UHGV-0152101_45	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0152101_45	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0152101_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0152101_47	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0152101_48	PHROG	phrog_3366	NA	unknown function
UHGV-0152101_48	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0152101_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0152101_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152101_49	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0152101_49	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0152101_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0152101_49	Structural annotation	PF11114	NA	NA
UHGV-0152101_50	PHROG	phrog_3266	tail completion	connector
UHGV-0152101_50	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0152101_50	Structural annotation	PF12691	NA	NA
UHGV-0152101_51	PHROG	phrog_3099	NA	unknown function
UHGV-0152101_51	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0152101_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0152101_52	Structural annotation	PF10666	NA	NA
UHGV-0152101_53	PHROG	phrog_706	NA	unknown function
UHGV-0152101_53	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0152101_53	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0152101_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0152101_53	Structural annotation	PF06854	NA	NA
UHGV-0152101_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152101_54	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0152101_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0152101_55	PHROG	phrog_1194	NA	unknown function
UHGV-0152101_56	UniRef90	UniRef90_R5YH87	CBM-cenC domain-containing protein	NA
UHGV-0152101_56	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0152101_56	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0152101_57	PHROG	phrog_1401	NA	unknown function
UHGV-0152101_57	UniRef90	UniRef90_UPI001628172B	NA	NA
UHGV-0152101_57	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0152101_57	Structural annotation	PF07761	NA	NA