UHGV-0152118

Genome information

Genome length 26,504 bps

CDS count 40

Completeness 83.32% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152118
vOTU ID	vOTU-027518
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460431
BioSample	SAMN05971665
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.03
Jumbo phage	No

Genome content
Genome length	26,504 bps
GC content	45.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	89.58%
Average CDS length	598.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152118_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152118_2	PHROG	phrog_14048	endolysin	lysis
UHGV-0152118_2	UniRef90	UniRef90_B9CLI8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152118_2	eggNOG-mapper	553184.ATORI0001_1164	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0152118_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0152118_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0152118_2	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0152118_2	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0152118_2	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-0152118_3	PHROG	phrog_297	holin	lysis
UHGV-0152118_3	UniRef90	UniRef90_C8WA86	Holin, phage phi LC3 family	NA
UHGV-0152118_3	eggNOG-mapper	521095.Apar_0594	COG5546 Small integral membrane protein	NA
UHGV-0152118_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0152118_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0152118_3	COG	COG5546	NA	NA
UHGV-0152118_5	PHROG	phrog_13141	NA	unknown function
UHGV-0152118_5	eggNOG-mapper	521095.Apar_0592	NA	NA
UHGV-0152118_5	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0152118_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0152118_7	UniRef90	UniRef90_A0A261FFB2	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0152118_7	eggNOG-mapper	521095.Apar_0590	NA	NA
UHGV-0152118_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0152118_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0152118_8	eggNOG-mapper	521095.Apar_0589	NA	NA
UHGV-0152118_8	Structural annotation	PF16774, TIGR02126, COG4722	NA	NA
UHGV-0152118_9	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0152118_9	UniRef90	UniRef90_C8WA80	Phage tape measure protein	NA
UHGV-0152118_9	eggNOG-mapper	521095.Apar_0588	nuclear chromosome segregation	NA
UHGV-0152118_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0152118_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0152118_9	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0152118_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0152118_12	PHROG	phrog_117	major tail protein	tail
UHGV-0152118_12	UniRef90	UniRef90_D6E9Y1	Bacterial surface proteins containing Ig-like domains	NA
UHGV-0152118_12	eggNOG-mapper	521095.Apar_0585	domain, Protein	NA
UHGV-0152118_12	COG	COG5492	NA	NA
UHGV-0152118_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0152118_13	PHROG	phrog_123	tail terminator	connector
UHGV-0152118_13	UniRef90	UniRef90_A0A430JLT2	NA	NA
UHGV-0152118_13	eggNOG-mapper	521095.Apar_0584	NA	NA
UHGV-0152118_13	Structural annotation	PF06141	NA	NA
UHGV-0152118_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-0152118_15	eggNOG-mapper	521095.Apar_0582	NA	NA
UHGV-0152118_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0152118_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0152118_16	UniRef90	UniRef90_UPI001105CCE8	Gp19/Gp15/Gp42 family protein	NA
UHGV-0152118_16	eggNOG-mapper	521095.Apar_0581	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0152118_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-0152118_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152118_17	UniRef90	UniRef90_C8WA72	Major capsid protein HK97	NA
UHGV-0152118_17	eggNOG-mapper	521095.Apar_0580	Phage capsid family	NA
UHGV-0152118_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152118_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152118_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152118_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152118_18	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0152118_18	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-0152118_18	eggNOG-mapper	521095.Apar_0579	NA	NA
UHGV-0152118_19	PHROG	phrog_13257	head maturation protease	head and packaging
UHGV-0152118_19	UniRef90	UniRef90_A0A3E4QYQ8	CdiA_C domain-containing protein	NA
UHGV-0152118_19	eggNOG-mapper	521095.Apar_0578	NA	NA
UHGV-0152118_20	PHROG	phrog_104	portal protein	head and packaging
UHGV-0152118_20	UniRef90	UniRef90_A0A5C7F7E3	Phage portal protein	NA
UHGV-0152118_20	eggNOG-mapper	521095.Apar_0577	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152118_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152118_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152118_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0152118_21	UniRef90	UniRef90_UPI001305466D	ATP-binding protein	NA
UHGV-0152118_21	eggNOG-mapper	521095.Apar_0576	Terminase	NA
UHGV-0152118_21	Pfam	PF13401	AAA domain	AAA_22
UHGV-0152118_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0152118_21	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0152118_23	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152118_23	UniRef90	UniRef90_C8WA66	HNH nuclease	NA
UHGV-0152118_23	eggNOG-mapper	521095.Apar_0574	HNH nucleases	NA
UHGV-0152118_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0152118_23	Structural annotation	PF01844	NA	NA
UHGV-0152118_24	eggNOG-mapper	1203602.HMPREF1527_01098	NA	NA
UHGV-0152118_26	eggNOG-mapper	1203602.HMPREF1527_01100	NA	NA
UHGV-0152118_26	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0152118_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152118_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152118_27	UniRef90	UniRef90_C8WA62	Single-stranded DNA-binding protein	NA
UHGV-0152118_27	eggNOG-mapper	521095.Apar_0570	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0152118_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152118_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152118_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152118_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152118_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0152118_30	KOfam	K14059	int; integrase	NA
UHGV-0152118_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0152118_30	UniRef90	UniRef90_C8WA59	Integrase family protein	NA
UHGV-0152118_30	eggNOG-mapper	521095.Apar_0567	Belongs to the 'phage' integrase family	NA
UHGV-0152118_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152118_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152118_30	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0152118_31	UniRef90	UniRef90_UPI0009310119	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0152118_32	KOfam	K14194	sdrC_D_E; serine-aspartate repeat-containing protein C/D/E	NA
UHGV-0152118_32	UniRef90	UniRef90_UPI001EF9F008	Ig-like domain-containing protein	NA
UHGV-0152118_32	eggNOG-mapper	661087.HMPREF1008_00250	cell wall anchor domain	NA
UHGV-0152118_32	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0152118_32	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0152118_32	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0152118_32	Structural annotation	PF11766, NF033845, COG1470	NA	NA
UHGV-0152118_33	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0152118_33	UniRef90	UniRef90_UPI000931BFE8	NA	NA
UHGV-0152118_33	eggNOG-mapper	521095.Apar_0563	NA	NA
UHGV-0152118_33	Pfam	PF14359	NA	DUF4406
UHGV-0152118_33	Structural annotation	PF14359	NA	NA
UHGV-0152118_36	PHROG	phrog_21525	NA	unknown function
UHGV-0152118_36	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0152118_37	Structural annotation	PF02559, TIGR03318, COG1329	NA	NA
UHGV-0152118_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0152118_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0152118_40	UniRef90	UniRef90_C8WA47	Prophage antirepressor	NA
UHGV-0152118_40	eggNOG-mapper	521095.Apar_0554	Antirepressor	NA
UHGV-0152118_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0152118_40	COG	COG3617	Prophage antirepressor	NA