UHGV-0152135

Genome information

Genome length 41,969 bps

CDS count 73

Completeness 93.92% (high-quality)

geNomad score 0.9704

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152135
vOTU ID	vOTU-062290
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_458408
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9704
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.72
Jumbo phage	No

Genome content
Genome length	41,969 bps
GC content	39.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	89.09%
Average CDS length	516.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152135_3	UniRef90	UniRef90_A0A414B784	HEAT repeat domain-containing protein	NA
UHGV-0152135_3	eggNOG-mapper	411469.EUBHAL_01334	HEAT repeats	NA
UHGV-0152135_3	Pfam	PF13646	HEAT repeats	HEAT_2
UHGV-0152135_3	COG	COG1413	HEAT repeat	NA
UHGV-0152135_4	UniRef90	UniRef90_R5B4J7	Tetratricopeptide repeat protein	NA
UHGV-0152135_4	eggNOG-mapper	411469.EUBHAL_01335	NA	NA
UHGV-0152135_4	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0152135_6	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-0152135_6	UniRef90	UniRef90_A0A173RXY6	GTP pyrophosphokinase ywaC	NA
UHGV-0152135_6	eggNOG-mapper	411469.EUBHAL_01337	Region found in RelA / SpoT proteins	NA
UHGV-0152135_6	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-0152135_6	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-0152135_7	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0152135_7	PHROG	phrog_95	integrase	integration and excision
UHGV-0152135_7	UniRef90	UniRef90_A0A173RXF2	Transposase and inactivated derivatives	NA
UHGV-0152135_7	eggNOG-mapper	673832.D2IYS3_9CAUD	Recombinase	NA
UHGV-0152135_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0152135_7	Pfam	PF07508	Recombinase	Recombinase
UHGV-0152135_7	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0152135_7	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0152135_8	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0152135_8	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0152135_8	UniRef90	UniRef90_A0A6N7YBE6	HicB family protein	NA
UHGV-0152135_8	eggNOG-mapper	518637.EUBIFOR_00139	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0152135_8	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0152135_8	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0152135_8	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0152135_9	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0152135_9	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0152135_9	UniRef90	UniRef90_A0A6N7YH45	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0152135_9	eggNOG-mapper	476272.RUMHYD_01978	periplasmic or secreted lipoprotein	NA
UHGV-0152135_9	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0152135_9	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0152135_9	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0152135_10	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0152135_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0152135_10	UniRef90	UniRef90_A0A173RY24	HTH-type transcriptional regulator sinR	NA
UHGV-0152135_10	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152135_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152135_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152135_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0152135_12	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0152135_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152135_12	UniRef90	UniRef90_A0A173S0H0	Antitoxin PezA	NA
UHGV-0152135_12	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0152135_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152135_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152135_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0152135_14	PHROG	phrog_27728	NA	unknown function
UHGV-0152135_14	eggNOG-mapper	1147.D082_31670	NA	NA
UHGV-0152135_14	Structural annotation	PF16538	NA	NA
UHGV-0152135_15	Structural annotation	PF21138, NF009630	NA	NA
UHGV-0152135_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0152135_27	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0152135_27	eggNOG-mapper	411468.CLOSCI_01469	NA	NA
UHGV-0152135_29	UniRef90	UniRef90_K1T9Q6	NA	NA
UHGV-0152135_29	Pfam	PF04448	NA	DUF551
UHGV-0152135_33	UniRef90	UniRef90_UPI001C02123C	NA	NA
UHGV-0152135_33	eggNOG-mapper	1120979.ATVB01000001_gene28	NA	NA
UHGV-0152135_33	Pfam	PF07866	NA	DUF1653
UHGV-0152135_33	COG	COG4728	NA	NA
UHGV-0152135_33	Structural annotation	PF07866, TIGR02450, COG4728	NA	NA
UHGV-0152135_34	PHROG	phrog_1455	NA	unknown function
UHGV-0152135_34	eggNOG-mapper	1567013.A0A0A7RTM3_9CAUD	NA	NA
UHGV-0152135_34	Pfam	PF21793	NA	DUF6877
UHGV-0152135_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152135_36	UniRef90	UniRef90_UPI0004B0420D	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0152135_36	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0152135_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0152135_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152135_38	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0152135_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152135_39	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0152135_39	Structural annotation	PF02996	NA	NA
UHGV-0152135_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0152135_40	UniRef90	UniRef90_A0A415G6V5	XRE family transcriptional regulator	NA
UHGV-0152135_40	eggNOG-mapper	1304866.K413DRAFT_4836	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152135_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152135_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0152135_41	UniRef90	UniRef90_A0A173S152	RNA_pol_Rpb1_2 domain-containing protein	NA
UHGV-0152135_41	Structural annotation	PF03412	NA	NA
UHGV-0152135_42	PHROG	phrog_443	holin	lysis
UHGV-0152135_42	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0152135_42	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0152135_42	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0152135_42	Structural annotation	PF16945	NA	NA
UHGV-0152135_43	PHROG	phrog_1863	NA	unknown function
UHGV-0152135_43	eggNOG-mapper	768486.EHR_09640	NA	NA
UHGV-0152135_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0152135_44	PHROG	phrog_291	endolysin	lysis
UHGV-0152135_44	UniRef90	UniRef90_A0A415G6T2	Cpl-7 domain-containing protein	NA
UHGV-0152135_44	eggNOG-mapper	411469.EUBHAL_01497	lysozyme activity	NA
UHGV-0152135_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0152135_44	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0152135_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0152135_44	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0152135_45	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0152135_45	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0152135_45	eggNOG-mapper	1234679.BN424_2628	transposase activity	NA
UHGV-0152135_45	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0152135_45	Structural annotation	PF07141	NA	NA
UHGV-0152135_46	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0152135_46	UniRef90	UniRef90_A0A415G6V0	HNH endonuclease	NA
UHGV-0152135_46	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0152135_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0152135_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0152135_46	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0152135_48	Structural annotation	PF17617, NF012201	NA	NA
UHGV-0152135_50	PHROG	phrog_36886	NA	unknown function
UHGV-0152135_50	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0152135_50	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0152135_52	PHROG	phrog_1066	NA	unknown function
UHGV-0152135_53	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0152135_53	UniRef90	UniRef90_A0A415G6S8	Terminase large subunit	NA
UHGV-0152135_53	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0152135_53	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0152135_53	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0152135_53	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0152135_53	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0152135_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0152135_54	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0152135_54	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0152135_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0152135_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0152135_54	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0152135_55	KOfam	K06904	NA	NA
UHGV-0152135_55	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0152135_55	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-0152135_55	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0152135_55	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0152135_55	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0152135_55	COG	COG3740	Phage head maturation protease	NA
UHGV-0152135_55	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0152135_56	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152135_56	UniRef90	UniRef90_A0A415G894	Phage major capsid protein	NA
UHGV-0152135_56	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0152135_56	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152135_56	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152135_56	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152135_56	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152135_57	UniRef90	UniRef90_A0A645AVJ0	S-l_SbsC_C domain-containing protein	NA
UHGV-0152135_57	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0152135_57	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0152135_57	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152135_57	Structural annotation	PF18316	NA	NA
UHGV-0152135_58	UniRef90	UniRef90_A0A843GGX3	Phage head-tail connector protein	NA
UHGV-0152135_58	eggNOG-mapper	1536774.H70357_10640	NA	NA
UHGV-0152135_58	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0152135_59	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0152135_59	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0152135_59	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0152135_60	Structural annotation	TIGR01725	NA	NA
UHGV-0152135_61	Structural annotation	PF05657	NA	NA
UHGV-0152135_62	PHROG	phrog_88	major tail protein	tail
UHGV-0152135_62	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0152135_62	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-0152135_62	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0152135_62	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0152135_65	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0152135_65	PHROG	phrog_5218	NA	unknown function
UHGV-0152135_65	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-0152135_65	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0152135_65	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0152135_65	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0152135_66	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0152135_66	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0152135_66	eggNOG-mapper	411473.RUMCAL_02824	NA	NA
UHGV-0152135_66	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0152135_66	COG	COG4722	Phage-related protein YomH	NA
UHGV-0152135_66	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0152135_67	PHROG	phrog_538	minor tail protein	tail
UHGV-0152135_67	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0152135_67	eggNOG-mapper	742733.HMPREF9469_05018	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0152135_67	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0152135_67	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0152135_68	PHROG	phrog_1220	head protein	head and packaging
UHGV-0152135_68	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0152135_68	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0152135_69	PHROG	phrog_5319	outer membrane protein	other
UHGV-0152135_69	eggNOG-mapper	500633.CLOHIR_00741	NA	NA
UHGV-0152135_71	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0152135_71	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0152135_72	PHROG	phrog_29601	NA	unknown function
UHGV-0152135_72	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-0152135_73	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-0152135_73	UniRef90	UniRef90_W7DLC8	GTP-pyrophosphokinase	NA
UHGV-0152135_73	eggNOG-mapper	411469.EUBHAL_01337	Region found in RelA / SpoT proteins	NA
UHGV-0152135_73	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-0152135_73	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA