UHGV-0152136

Genome information

Genome length 43,200 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152136
vOTU ID	vOTU-010560
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_458409
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.84
Jumbo phage	No

Genome content
Genome length	43,200 bps
GC content	38.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	86.06%
Average CDS length	794.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152136_1	eggNOG-mapper	1035196.HMPREF9998_00748	helix_turn_helix, Arsenical Resistance Operon Repressor	NA
UHGV-0152136_1	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0152136_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152136_3	PHROG	phrog_435	endolysin	lysis
UHGV-0152136_3	UniRef90	UniRef90_A0A374APK8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152136_3	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0152136_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0152136_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152136_3	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0152136_4	PHROG	phrog_199	holin	lysis
UHGV-0152136_4	UniRef90	UniRef90_A0A1Q2CAY6	Holin	NA
UHGV-0152136_4	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0152136_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0152136_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0152136_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0152136_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0152136_5	PHROG	phrog_2566	NA	unknown function
UHGV-0152136_5	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0152136_6	PHROG	phrog_16267	NA	unknown function
UHGV-0152136_6	UniRef90	UniRef90_A0A417V835	Peptidase S74 domain-containing protein	NA
UHGV-0152136_6	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0152136_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0152136_6	COG	COG4926	Phage-related protein	NA
UHGV-0152136_7	PHROG	phrog_1401	NA	unknown function
UHGV-0152136_7	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0152136_7	Structural annotation	PF07761	NA	NA
UHGV-0152136_8	PHROG	phrog_1194	NA	unknown function
UHGV-0152136_8	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0152136_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0152136_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152136_9	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0152136_9	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0152136_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0152136_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0152136_10	PHROG	phrog_8355	NA	unknown function
UHGV-0152136_10	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0152136_10	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0152136_11	PHROG	phrog_8300	NA	unknown function
UHGV-0152136_11	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0152136_11	Structural annotation	PF06854	NA	NA
UHGV-0152136_12	PHROG	phrog_820	major tail protein	tail
UHGV-0152136_12	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0152136_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0152136_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0152136_13	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0152136_13	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0152136_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0152136_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0152136_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152136_14	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0152136_15	PHROG	phrog_8710	NA	unknown function
UHGV-0152136_15	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0152136_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0152136_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0152136_16	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0152136_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0152136_17	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0152136_17	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0152136_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0152136_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0152136_18	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0152136_19	Structural annotation	PF20873	NA	NA
UHGV-0152136_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152136_21	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-0152136_21	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0152136_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152136_21	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0152136_21	Structural annotation	PF06152	NA	NA
UHGV-0152136_22	PHROG	phrog_25639	NA	unknown function
UHGV-0152136_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0152136_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152136_23	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0152136_23	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0152136_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152136_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152136_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0152136_24	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0152136_24	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0152136_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152136_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0152136_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0152136_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0152136_25	UniRef90	UniRef90_A0A417V811	Terminase small subunit	NA
UHGV-0152136_25	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0152136_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0152136_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0152136_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0152136_27	eggNOG-mapper	1220589.CD32_01770	NA	NA
UHGV-0152136_27	AcrCatalog	cluster_38765	NA	NA
UHGV-0152136_27	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-0152136_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152136_28	UniRef90	UniRef90_A0A1Q2C402	Sigma70_r4 domain-containing protein	NA
UHGV-0152136_28	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0152136_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0152136_28	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0152136_28	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0152136_29	Structural annotation	MF_00773, NF011481, COG2888	NA	NA
UHGV-0152136_30	PHROG	phrog_31515	NA	unknown function
UHGV-0152136_30	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0152136_31	PHROG	phrog_17690	NA	unknown function
UHGV-0152136_31	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0152136_31	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0152136_32	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0152136_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152136_32	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-0152136_32	eggNOG-mapper	469618.FVAG_01298	SNF2 family N-terminal domain	NA
UHGV-0152136_32	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0152136_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0152136_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0152136_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0152136_32	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0152136_33	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152136_33	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-0152136_33	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0152136_33	Structural annotation	PF18741	NA	NA
UHGV-0152136_34	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152136_34	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0152136_34	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-0152136_34	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0152136_34	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0152136_34	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0152136_35	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0152136_35	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0152136_35	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-0152136_35	eggNOG-mapper	86416.Clopa_0561	DNA polymerase	NA
UHGV-0152136_35	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0152136_35	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0152136_35	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0152136_36	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152136_36	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-0152136_36	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0152136_36	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0152136_36	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0152136_37	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152136_37	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-0152136_37	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-0152136_37	Pfam	PF10926	NA	DUF2800
UHGV-0152136_37	COG	COG2887	RecB family exonuclease	NA
UHGV-0152136_37	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0152136_38	PHROG	phrog_18562	NA	unknown function
UHGV-0152136_38	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-0152136_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0152136_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152136_42	UniRef90	UniRef90_UPI001570EF62	helix-turn-helix domain-containing protein	NA
UHGV-0152136_42	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152136_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152136_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152136_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152136_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0152136_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0152136_43	UniRef90	UniRef90_UPI00156D79C9	XRE family transcriptional regulator	NA
UHGV-0152136_43	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0152136_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152136_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0152136_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152136_43	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0152136_44	UniRef90	UniRef90_UPI00157087A4	Ig-like domain-containing protein	NA
UHGV-0152136_44	eggNOG-mapper	1449050.JNLE01000003_gene3872	Bacterial Ig-like domain (group 2)	NA
UHGV-0152136_44	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0152136_44	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0152136_45	UniRef90	UniRef90_A0A173RTG3	Bacterial Ig-like domain (Group 2)	NA
UHGV-0152136_45	eggNOG-mapper	1449050.JNLE01000003_gene3872	Bacterial Ig-like domain (group 2)	NA
UHGV-0152136_45	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0152136_45	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0152136_46	KOfam	K14059	int; integrase	NA
UHGV-0152136_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0152136_46	UniRef90	UniRef90_A0A374AMT2	Zinc-ribbon domain-containing protein	NA
UHGV-0152136_46	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0152136_46	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0152136_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152136_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152136_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0152136_47	UniRef90	UniRef90_A0A843FHH4	GGGtGRT protein	NA
UHGV-0152136_47	eggNOG-mapper	1235790.C805_01619	Cytoplasmic, score 8.87	NA
UHGV-0152136_47	Pfam	PF14057	GGGtGRT protein	GGGtGRT