UHGV-0152166

Genome information

Genome length 57,253 bps

CDS count 104

Completeness 100.00% (complete)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152166
vOTU ID	vOTU-003260
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495627
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.33
Jumbo phage	No

Genome content
Genome length	57,253 bps
GC content	48.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	104
CDS density	86.56%
Average CDS length	478.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152166_1	Pfam	PF04448	NA	DUF551
UHGV-0152166_3	PHROG	phrog_7070	NA	unknown function
UHGV-0152166_3	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0152166_4	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0152166_5	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0152166_6	PHROG	phrog_16490	NA	unknown function
UHGV-0152166_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0152166_12	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0152166_12	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0152166_12	Structural annotation	PF16640	NA	NA
UHGV-0152166_13	PHROG	phrog_15303	NA	unknown function
UHGV-0152166_13	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0152166_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0152166_15	PHROG	phrog_291	endolysin	lysis
UHGV-0152166_15	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0152166_15	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0152166_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0152166_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0152166_15	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0152166_16	PHROG	phrog_1382	NA	unknown function
UHGV-0152166_17	UniRef90	UniRef90_UPI000C76580F	holin	NA
UHGV-0152166_18	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0152166_19	PHROG	phrog_18725	NA	unknown function
UHGV-0152166_19	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0152166_20	PHROG	phrog_13879	NA	unknown function
UHGV-0152166_20	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0152166_20	Pfam	PF19789	NA	DUF6273
UHGV-0152166_20	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0152166_21	PHROG	phrog_1194	NA	unknown function
UHGV-0152166_21	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0152166_21	Pfam	PF20458	NA	DUF6711
UHGV-0152166_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0152166_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152166_22	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0152166_22	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0152166_23	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0152166_24	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0152166_24	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0152166_24	Pfam	PF16478	NA	DUF5055
UHGV-0152166_24	Structural annotation	PF16478	NA	NA
UHGV-0152166_25	PHROG	phrog_158	major tail protein	tail
UHGV-0152166_25	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0152166_25	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0152166_25	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0152166_26	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0152166_28	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0152166_29	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0152166_29	Structural annotation	TIGR01560	NA	NA
UHGV-0152166_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0152166_30	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0152166_30	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0152166_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0152166_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0152166_33	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0152166_33	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0152166_33	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0152166_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0152166_34	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0152166_34	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152166_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152166_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152166_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152166_37	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0152166_37	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0152166_37	COG	COG5410	NA	NA
UHGV-0152166_37	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0152166_41	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0152166_41	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0152166_41	UniRef90	UniRef90_A0A3E2UAG1	Recombinase family protein	NA
UHGV-0152166_41	eggNOG-mapper	1280664.AUIX01000018_gene2067	Resolvase, N terminal domain	NA
UHGV-0152166_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0152166_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0152166_41	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0152166_44	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0152166_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0152166_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0152166_45	UniRef90	UniRef90_A0A7Z6MPP3	ANT domain-containing protein	NA
UHGV-0152166_45	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0152166_45	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0152166_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0152166_45	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0152166_45	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0152166_47	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0152166_47	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0152166_47	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0152166_51	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152166_51	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0152166_53	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0152166_53	UniRef90	UniRef90_B0NH38	Replication initiator protein A domain protein	NA
UHGV-0152166_53	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0152166_53	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0152166_53	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0152166_53	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0152166_54	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0152166_54	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0152166_55	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0152166_55	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0152166_55	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0152166_55	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0152166_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0152166_55	COG	COG0305	Replicative DNA helicase	NA
UHGV-0152166_55	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0152166_56	PHROG	phrog_15768	NA	unknown function
UHGV-0152166_56	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0152166_56	eggNOG-mapper	1189620.AJXL01000045_gene1040	NA	NA
UHGV-0152166_56	Pfam	PF19808	NA	DUF6291
UHGV-0152166_56	Structural annotation	PF19808	NA	NA
UHGV-0152166_57	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0152166_57	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0152166_57	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0152166_57	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0152166_57	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0152166_57	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0152166_59	PHROG	phrog_924	NA	unknown function
UHGV-0152166_59	UniRef90	UniRef90_UPI0015D20CF0	NA	NA
UHGV-0152166_59	Pfam	PF04448	NA	DUF551
UHGV-0152166_59	Structural annotation	NF041588	NA	NA
UHGV-0152166_60	Structural annotation	NF041588	NA	NA
UHGV-0152166_69	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0152166_69	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0152166_69	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0152166_69	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0152166_71	Structural annotation	PF16677	NA	NA
UHGV-0152166_72	UniRef90	UniRef90_UPI000D6522D3	NA	NA
UHGV-0152166_72	Pfam	PF04448	NA	DUF551
UHGV-0152166_72	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0152166_73	Pfam	PF04448	NA	DUF551
UHGV-0152166_73	Structural annotation	PF04448	NA	NA
UHGV-0152166_75	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0152166_78	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0152166_78	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0152166_80	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152166_80	UniRef90	UniRef90_UPI000C78AB6D	Holliday junction resolvase RecU	NA
UHGV-0152166_80	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0152166_80	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0152166_81	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0152166_82	PHROG	phrog_4572	NA	unknown function
UHGV-0152166_82	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0152166_83	PHROG	phrog_18107	NA	unknown function
UHGV-0152166_83	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0152166_83	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0152166_83	Structural annotation	PF05037	NA	NA
UHGV-0152166_84	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152166_84	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0152166_84	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0152166_84	Pfam	PF13479	AAA domain	AAA_24
UHGV-0152166_84	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0152166_85	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0152166_85	Structural annotation	PF13451	NA	NA
UHGV-0152166_87	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0152166_87	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0152166_87	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0152166_87	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0152166_87	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0152166_88	Structural annotation	PF14143	NA	NA
UHGV-0152166_89	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152166_89	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0152166_92	Structural annotation	PF10922	NA	NA
UHGV-0152166_93	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0152166_93	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152166_93	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0152166_94	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152166_94	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0152166_94	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0152166_94	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0152166_94	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0152166_97	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0152166_98	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0152166_98	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0152166_98	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0152166_98	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0152166_98	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0152166_98	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0152166_98	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0152166_99	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0152166_99	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0152166_99	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0152166_99	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0152166_99	Pfam	PF13614	AAA domain	AAA_31
UHGV-0152166_99	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0152166_99	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0152166_101	Structural annotation	PF07878	NA	NA
UHGV-0152166_103	Structural annotation	MF_00273	NA	NA