UHGV-0152176

Genome information

vOTU vOTU-022023

Genome length 27,798 bps

CDS count 55

Completeness 52.81% (medium-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152176
vOTU ID	vOTU-022023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490267
BioSample	SAMN06110006
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.74
Jumbo phage	No

Genome content
Genome length	27,798 bps
GC content	48.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	84.16%
Average CDS length	429.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152176_1	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152176_1	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0152176_1	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0152176_1	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0152176_1	COG	COG5410	NA	NA
UHGV-0152176_1	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0152176_3	eggNOG-mapper	1235802.C823_04517	NA	NA
UHGV-0152176_6	UniRef90	UniRef90_UPI0012ABADBF	Arc family DNA-binding protein	NA
UHGV-0152176_6	Structural annotation	PF08681	NA	NA
UHGV-0152176_7	Structural annotation	PF16677	NA	NA
UHGV-0152176_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0152176_8	PHROG	phrog_18293	methyltransferase	other
UHGV-0152176_8	UniRef90	UniRef90_A0A382L9F8	N6_N4_Mtase domain-containing protein	NA
UHGV-0152176_8	eggNOG-mapper	938278.CAJO01000051_gene796	DNA methylase	NA
UHGV-0152176_8	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0152176_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152176_8	COG	COG0863	DNA modification methylase	NA
UHGV-0152176_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0152176_9	PHROG	phrog_12862	NA	unknown function
UHGV-0152176_9	UniRef90	UniRef90_UPI001E530B79	site-specific DNA-methyltransferase	NA
UHGV-0152176_9	eggNOG-mapper	585394.RHOM_02055	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0152176_9	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0152176_9	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152176_9	COG	COG0863	DNA modification methylase	NA
UHGV-0152176_9	Structural annotation	PF01555, MF_01057, NF010253, COG0863	NA	NA
UHGV-0152176_10	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0152176_10	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0152176_10	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0152176_10	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0152176_10	Pfam	PF00692	dUTPase	dUTPase
UHGV-0152176_10	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0152176_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0152176_10	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0152176_17	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0152176_17	UniRef90	UniRef90_A0A1Q6T6T6	Adenine methyltransferase	NA
UHGV-0152176_17	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0152176_17	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0152176_17	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0152176_17	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0152176_20	PHROG	phrog_9958	NA	unknown function
UHGV-0152176_20	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0152176_20	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0152176_20	Structural annotation	PF19789	NA	NA
UHGV-0152176_21	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0152176_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0152176_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0152176_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0152176_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0152176_21	Structural annotation	PF14354, NF007260, COG3422	NA	NA
UHGV-0152176_23	KOfam	K06940	NA	NA
UHGV-0152176_23	PHROG	phrog_32498	NA	unknown function
UHGV-0152176_23	UniRef90	UniRef90_A0A1W7ABU4	Flagellin N-methylase	NA
UHGV-0152176_23	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0152176_23	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0152176_23	Structural annotation	PF03692	NA	NA
UHGV-0152176_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0152176_26	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0152176_26	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0152176_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0152176_26	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0152176_27	UniRef90	UniRef90_A0A3E3DHB1	Immunoglobulin	NA
UHGV-0152176_27	eggNOG-mapper	1235797.C816_04036	NA	NA
UHGV-0152176_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0152176_28	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152176_28	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0152176_28	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0152176_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0152176_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0152176_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0152176_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0152176_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0152176_30	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0152176_30	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0152176_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0152176_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0152176_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0152176_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0152176_31	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0152176_31	UniRef90	UniRef90_UPI001F1B43AF	GntR family transcriptional regulator	NA
UHGV-0152176_31	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-0152176_31	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0152176_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152176_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152176_32	UniRef90	UniRef90_A0A354L2I3	Single-stranded DNA-binding protein	NA
UHGV-0152176_32	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0152176_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152176_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152176_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152176_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152176_32	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0152176_33	PHROG	phrog_7566	NA	unknown function
UHGV-0152176_33	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0152176_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0152176_34	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0152176_34	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0152176_34	Structural annotation	PF05772	NA	NA
UHGV-0152176_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152176_35	UniRef90	UniRef90_A0A7X7UVS4	ERF family protein	NA
UHGV-0152176_35	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-0152176_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0152176_35	Structural annotation	PF04404, TIGR00607, COG5468	NA	NA
UHGV-0152176_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0152176_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0152176_42	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0152176_42	eggNOG-mapper	445971.ANASTE_00714	BRO family, N-terminal domain	NA
UHGV-0152176_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0152176_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0152176_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0152176_42	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0152176_43	PHROG	phrog_5070	NA	unknown function
UHGV-0152176_43	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0152176_43	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0152176_43	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0152176_44	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0152176_44	UniRef90	UniRef90_UPI000A0213FB	helix-turn-helix domain-containing protein	NA
UHGV-0152176_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152176_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152176_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0152176_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0152176_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152176_45	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0152176_45	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0152176_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152176_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152176_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0152176_51	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0152176_51	UniRef90	UniRef90_A0A353EYT4	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0152176_51	eggNOG-mapper	1297570.MESS4_450005	HicB family	NA
UHGV-0152176_51	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0152176_51	Structural annotation	PF21748, COG4226	NA	NA
UHGV-0152176_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152176_53	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0152176_54	KOfam	K14059	int; integrase	NA
UHGV-0152176_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0152176_54	UniRef90	UniRef90_UPI0018989279	site-specific integrase	NA
UHGV-0152176_54	eggNOG-mapper	1514668.JOOA01000001_gene661	Belongs to the 'phage' integrase family	NA
UHGV-0152176_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152176_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152176_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0152176_55	KOfam	K12950	ctpC; manganese-transporting P-type ATPase C [EC:7.2.2.22]	NA
UHGV-0152176_55	PHROG	phrog_12316	ATPase	other
UHGV-0152176_55	UniRef90	UniRef90_A0A367GC56	Heavy metal translocating P-type ATPase	NA
UHGV-0152176_55	eggNOG-mapper	718252.FP2_25220	NA	NA
UHGV-0152176_55	Pfam	PF00122	E1-E2 ATPase	E1-E2_ATPase
UHGV-0152176_55	Pfam	PF00702	haloacid dehalogenase-like hydrolase	Hydrolase
UHGV-0152176_55	NCBIFam	TIGR01525.1	heavy metal translocating P-type ATPase	NA
UHGV-0152176_55	COG	COG2217	Cation-transporting P-type ATPase	NA