UHGV-0152177

Genome information

Genome length 51,439 bps

CDS count 87

Completeness 89.14% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152177
vOTU ID	vOTU-027525
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_488360
BioSample	SAMN06110177
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.32
Jumbo phage	No

Genome content
Genome length	51,439 bps
GC content	39.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	87.50%
Average CDS length	520.31 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152177_1	PHROG	phrog_31631	NA	unknown function
UHGV-0152177_2	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0152177_2	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152177_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152177_5	Structural annotation	PF19923	NA	NA
UHGV-0152177_6	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0152177_7	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0152177_8	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0152177_8	UniRef90	UniRef90_UPI00189C4F21	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0152177_8	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0152177_8	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0152177_8	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0152177_8	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0152177_9	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0152177_13	Structural annotation	PF04466	NA	NA
UHGV-0152177_15	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0152177_16	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0152177_19	PHROG	phrog_1233	NA	unknown function
UHGV-0152177_19	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0152177_19	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0152177_19	Structural annotation	PF13058	NA	NA
UHGV-0152177_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152177_20	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0152177_20	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0152177_20	COG	COG5410	NA	NA
UHGV-0152177_20	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0152177_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152177_21	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0152177_21	eggNOG-mapper	689781.AUJX01000003_gene2845	sigma factor activity	NA
UHGV-0152177_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0152177_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0152177_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0152177_22	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0152177_22	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152177_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152177_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152177_23	UniRef90	UniRef90_A0A6H1WYD4	DNA-binding protein	NA
UHGV-0152177_23	eggNOG-mapper	1511.CLOST_0069	NA	NA
UHGV-0152177_23	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0152177_24	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152177_24	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0152177_24	eggNOG-mapper	1129192.A0A0E3D9L6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0152177_25	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0152177_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-0152177_26	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0152177_27	PHROG	phrog_29	major head protein	head and packaging
UHGV-0152177_27	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0152177_27	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0152177_27	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0152177_27	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0152177_28	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0152177_28	Structural annotation	PF21169	NA	NA
UHGV-0152177_29	PHROG	phrog_774	NA	unknown function
UHGV-0152177_29	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0152177_30	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0152177_31	PHROG	phrog_4105	NA	unknown function
UHGV-0152177_31	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0152177_32	PHROG	phrog_443	holin	lysis
UHGV-0152177_32	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0152177_32	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0152177_32	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0152177_32	Structural annotation	PF16945	NA	NA
UHGV-0152177_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0152177_34	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0152177_34	AcrCatalog	cluster_24841	NA	NA
UHGV-0152177_35	Structural annotation	PF05657	NA	NA
UHGV-0152177_36	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0152177_36	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0152177_39	PHROG	phrog_14030	NA	unknown function
UHGV-0152177_39	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0152177_39	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0152177_39	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0152177_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152177_40	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0152177_40	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0152177_40	COG	COG1511	NA	NA
UHGV-0152177_40	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0152177_41	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0152177_41	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0152177_41	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0152177_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0152177_42	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0152177_42	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0152177_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0152177_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0152177_42	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0152177_43	PHROG	phrog_1194	NA	unknown function
UHGV-0152177_43	Pfam	PF20458	NA	DUF6711
UHGV-0152177_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0152177_44	PHROG	phrog_18190	NA	unknown function
UHGV-0152177_44	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0152177_44	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0152177_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0152177_44	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0152177_45	PHROG	phrog_17196	kinase	other
UHGV-0152177_45	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0152177_45	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0152177_46	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0152177_47	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0152177_48	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0152177_48	Structural annotation	NF040910	NA	NA
UHGV-0152177_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152177_52	UniRef90	UniRef90_A0A1C5WLU7	Helix-turn-helix domain	NA
UHGV-0152177_52	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0152177_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152177_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152177_52	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0152177_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152177_53	UniRef90	UniRef90_UPI001D081A91	helix-turn-helix transcriptional regulator	NA
UHGV-0152177_53	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152177_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152177_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152177_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0152177_57	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0152177_57	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0152177_57	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0152177_57	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0152177_57	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0152177_57	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0152177_58	PHROG	phrog_32192	NA	unknown function
UHGV-0152177_58	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-0152177_63	PHROG	phrog_26861	NA	unknown function
UHGV-0152177_63	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0152177_63	eggNOG-mapper	1304866.K413DRAFT_2899	PFAM single-strand binding protein	NA
UHGV-0152177_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152177_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152177_63	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0152177_64	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0152177_64	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152177_64	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-0152177_64	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0152177_64	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0152177_64	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0152177_67	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0152177_70	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152177_70	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0152177_70	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0152177_70	Pfam	PF03837	RecT family	RecT
UHGV-0152177_70	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0152177_71	PHROG	phrog_25456	NA	unknown function
UHGV-0152177_72	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0152177_72	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0152177_72	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0152177_72	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0152177_72	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0152177_72	dbAPIS	APIS058	NA	NA
UHGV-0152177_72	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0152177_72	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0152177_73	Structural annotation	PF09629, NF002745	NA	NA
UHGV-0152177_75	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152177_75	UniRef90	UniRef90_A0A7U3T981	Helix-turn-helix DNA binding domain protein	NA
UHGV-0152177_75	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0152177_76	PHROG	phrog_19106	NA	unknown function
UHGV-0152177_76	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0152177_76	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0152177_76	Structural annotation	TIGR01453	NA	NA
UHGV-0152177_77	PHROG	phrog_11769	NA	unknown function
UHGV-0152177_77	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0152177_77	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0152177_77	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0152177_77	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0152177_77	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0152177_78	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0152177_78	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0152177_78	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0152177_78	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0152177_78	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0152177_78	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0152177_78	COG	COG0305	Replicative DNA helicase	NA
UHGV-0152177_78	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0152177_81	PHROG	phrog_21026	NA	unknown function
UHGV-0152177_83	PHROG	phrog_8684	NA	unknown function
UHGV-0152177_83	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0152177_83	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0152177_83	Pfam	PF09643	YopX protein	YopX
UHGV-0152177_83	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0152177_83	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0152177_84	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0152177_85	PHROG	phrog_20593	NA	unknown function
UHGV-0152177_86	PHROG	phrog_874	NA	unknown function
UHGV-0152177_86	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0152177_86	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0152177_86	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA