UHGV-0152200

Genome information

Genome length 56,823 bps

CDS count 98

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152200
vOTU ID	vOTU-046161
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484554
BioSample	SAMN06110360
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.07
Jumbo phage	No

Genome content
Genome length	56,823 bps
GC content	40.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	86.99%
Average CDS length	508.01 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152200_2	PHROG	phrog_20593	NA	unknown function
UHGV-0152200_3	PHROG	phrog_22292	NA	unknown function
UHGV-0152200_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0152200_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0152200_6	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0152200_6	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0152200_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0152200_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0152200_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-0152200_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0152200_7	PHROG	phrog_11769	NA	unknown function
UHGV-0152200_7	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0152200_7	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0152200_7	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0152200_7	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0152200_7	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0152200_8	PHROG	phrog_19106	NA	unknown function
UHGV-0152200_8	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0152200_8	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0152200_8	Structural annotation	TIGR01453	NA	NA
UHGV-0152200_10	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0152200_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0152200_10	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0152200_10	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0152200_10	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0152200_10	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0152200_10	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0152200_11	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152200_11	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0152200_11	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0152200_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152200_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152200_12	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0152200_12	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0152200_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0152200_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152200_12	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0152200_13	PHROG	phrog_25456	NA	unknown function
UHGV-0152200_14	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152200_14	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0152200_14	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0152200_14	Pfam	PF03837	RecT family	RecT
UHGV-0152200_14	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0152200_17	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0152200_20	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0152200_20	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152200_20	UniRef90	UniRef90_A0A1Q6KA53	AAA_15 domain-containing protein	NA
UHGV-0152200_20	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0152200_20	Pfam	PF13476	AAA domain	AAA_23
UHGV-0152200_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0152200_20	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0152200_22	PHROG	phrog_26861	NA	unknown function
UHGV-0152200_22	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0152200_22	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0152200_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152200_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152200_22	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0152200_26	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0152200_26	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-0152200_26	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0152200_26	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0152200_26	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0152200_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0152200_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0152200_28	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0152200_28	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0152200_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152200_28	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0152200_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152200_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0152200_29	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0152200_29	Structural annotation	NF040910	NA	NA
UHGV-0152200_30	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0152200_31	Structural annotation	PF02839	NA	NA
UHGV-0152200_32	PHROG	phrog_17196	kinase	other
UHGV-0152200_32	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0152200_32	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0152200_33	PHROG	phrog_18190	NA	unknown function
UHGV-0152200_33	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0152200_33	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0152200_33	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0152200_33	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0152200_34	PHROG	phrog_1194	NA	unknown function
UHGV-0152200_34	Pfam	PF20458	NA	DUF6711
UHGV-0152200_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0152200_35	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0152200_35	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0152200_35	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0152200_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0152200_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0152200_35	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0152200_36	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0152200_36	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0152200_36	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0152200_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152200_37	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0152200_37	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0152200_37	COG	COG1511	NA	NA
UHGV-0152200_37	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0152200_38	PHROG	phrog_14030	NA	unknown function
UHGV-0152200_38	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0152200_38	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0152200_38	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0152200_41	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0152200_41	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0152200_42	Structural annotation	PF05657	NA	NA
UHGV-0152200_43	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0152200_43	AcrCatalog	cluster_24841	NA	NA
UHGV-0152200_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0152200_45	PHROG	phrog_443	holin	lysis
UHGV-0152200_45	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0152200_45	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0152200_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0152200_45	Structural annotation	PF16945	NA	NA
UHGV-0152200_46	PHROG	phrog_4105	NA	unknown function
UHGV-0152200_46	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0152200_47	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0152200_48	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0152200_48	Structural annotation	PF21169	NA	NA
UHGV-0152200_49	PHROG	phrog_29	major head protein	head and packaging
UHGV-0152200_49	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0152200_49	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0152200_49	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0152200_49	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0152200_50	PHROG	phrog_909	major head protein	head and packaging
UHGV-0152200_50	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0152200_51	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0152200_52	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152200_52	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0152200_52	eggNOG-mapper	1129192.A0A0E3D9L6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0152200_53	UniRef90	UniRef90_A0A6H1WYD4	DNA-binding protein	NA
UHGV-0152200_53	eggNOG-mapper	1511.CLOST_0069	NA	NA
UHGV-0152200_53	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0152200_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0152200_54	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0152200_54	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152200_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152200_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152200_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152200_55	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0152200_55	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0152200_55	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0152200_55	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0152200_56	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152200_56	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0152200_56	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0152200_56	COG	COG5410	NA	NA
UHGV-0152200_56	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0152200_65	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0152200_65	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0152200_67	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0152200_68	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0152200_68	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0152200_68	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0152200_68	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0152200_68	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0152200_68	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0152200_69	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0152200_70	Structural annotation	PF19923	NA	NA
UHGV-0152200_71	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-0152200_73	UniRef90	UniRef90_A0A2N5NVL9	Transcriptional regulator	NA
UHGV-0152200_73	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152200_73	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152200_74	UniRef90	UniRef90_A0A3R6B3D9	XRE family transcriptional regulator	NA
UHGV-0152200_74	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0152200_74	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152200_74	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0152200_81	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0152200_81	Structural annotation	PF13058	NA	NA
UHGV-0152200_82	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0152200_83	PHROG	phrog_20016	NA	unknown function
UHGV-0152200_83	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0152200_83	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0152200_83	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0152200_85	PHROG	phrog_16490	NA	unknown function
UHGV-0152200_85	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0152200_86	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0152200_87	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0152200_89	KOfam	K14059	int; integrase	NA
UHGV-0152200_89	PHROG	phrog_1	integrase	integration and excision
UHGV-0152200_89	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0152200_89	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0152200_89	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152200_89	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152200_89	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0152200_90	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0152200_90	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0152200_90	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0152200_91	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0152200_91	PHROG	phrog_17284	NA	unknown function
UHGV-0152200_91	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0152200_91	eggNOG-mapper	120574.Q94M66_9CAUD	C-5 cytosine-specific DNA methylase	NA
UHGV-0152200_91	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0152200_91	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0152200_94	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0152200_94	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0152200_94	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0152200_94	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0152200_94	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0152200_94	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0152200_94	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0152200_94	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0152200_94	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0152200_96	PHROG	phrog_3458	NA	unknown function
UHGV-0152200_98	PHROG	phrog_874	NA	unknown function
UHGV-0152200_98	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0152200_98	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA