UHGV-0152258

Genome information

Genome length 44,156 bps

CDS count 68

Completeness 61.74% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152258
vOTU ID	vOTU-027532
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_471971
BioSample	SAMN06112079
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	61.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.21
Jumbo phage	No

Genome content
Genome length	44,156 bps
GC content	41.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.25%
Average CDS length	595.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152258_2	UniRef90	UniRef90_UPI001897398F	CTP synthase	NA
UHGV-0152258_2	eggNOG-mapper	1232447.BAHW02000005_gene154	NA	NA
UHGV-0152258_3	PHROG	phrog_1129	holin	lysis
UHGV-0152258_3	UniRef90	UniRef90_UPI00189AB2A3	phage holin family protein	NA
UHGV-0152258_3	eggNOG-mapper	33035.JPJF01000043_gene995	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0152258_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0152258_3	Structural annotation	PF06946	NA	NA
UHGV-0152258_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0152258_4	UniRef90	UniRef90_UPI000934E5E6	NA	NA
UHGV-0152258_4	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0152258_4	Pfam	PF14359	NA	DUF4406
UHGV-0152258_4	Structural annotation	PF14359	NA	NA
UHGV-0152258_5	UniRef90	UniRef90_UPI001F05C666	C40 family peptidase	NA
UHGV-0152258_5	eggNOG-mapper	394503.Ccel_3272	NLP P60 protein	NA
UHGV-0152258_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0152258_13	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0152258_14	PHROG	phrog_32322	NA	unknown function
UHGV-0152258_14	UniRef90	UniRef90_UPI000933FFCD	PF13754 domain-containing protein	NA
UHGV-0152258_14	eggNOG-mapper	1256908.HMPREF0373_00675	NA	NA
UHGV-0152258_14	Pfam	PF13754	NA	Big_3_4
UHGV-0152258_14	Structural annotation	PF13754	NA	NA
UHGV-0152258_15	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0152258_15	PHROG	phrog_11157	NA	unknown function
UHGV-0152258_15	UniRef90	UniRef90_UPI00093277E2	Ig-like domain-containing protein	NA
UHGV-0152258_15	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0152258_15	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0152258_15	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0152258_15	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0152258_15	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0152258_16	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0152258_17	PHROG	phrog_18725	NA	unknown function
UHGV-0152258_17	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-0152258_18	PHROG	phrog_13879	NA	unknown function
UHGV-0152258_18	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0152258_18	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0152258_19	PHROG	phrog_1194	NA	unknown function
UHGV-0152258_19	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0152258_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0152258_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152258_20	UniRef90	UniRef90_A0A2V2YP26	Phage-related protein	NA
UHGV-0152258_20	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0152258_20	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0152258_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0152258_21	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0152258_23	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0152258_24	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0152258_25	UniRef90	UniRef90_A0A7G9WJZ3	HK97 gp10 family phage protein	NA
UHGV-0152258_25	eggNOG-mapper	1235800.C819_00481	NA	NA
UHGV-0152258_25	Structural annotation	TIGR01725	NA	NA
UHGV-0152258_27	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0152258_30	PHROG	phrog_247	major head protein	head and packaging
UHGV-0152258_30	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0152258_30	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0152258_30	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0152258_31	Structural annotation	PF14265	NA	NA
UHGV-0152258_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0152258_32	UniRef90	UniRef90_UPI00189855AC	phage portal protein	NA
UHGV-0152258_32	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152258_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152258_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152258_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152258_33	UniRef90	UniRef90_A0A840CR02	Putative phage terminase large subunit-like protein	NA
UHGV-0152258_33	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0152258_33	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0152258_33	COG	COG5410	NA	NA
UHGV-0152258_33	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0152258_39	PHROG	phrog_5763	NA	unknown function
UHGV-0152258_39	eggNOG-mapper	999413.HMPREF1094_00199	NA	NA
UHGV-0152258_40	PHROG	phrog_1281	NA	unknown function
UHGV-0152258_40	UniRef90	UniRef90_UPI00093298D8	NA	NA
UHGV-0152258_40	eggNOG-mapper	1033744.CAEL01000026_gene1412	NA	NA
UHGV-0152258_40	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0152258_40	COG	COG3600	NA	NA
UHGV-0152258_40	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0152258_41	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0152258_41	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0152258_41	UniRef90	UniRef90_UPI00189A4482	recombinase family protein	NA
UHGV-0152258_41	eggNOG-mapper	428127.EUBDOL_01535	resolvase	NA
UHGV-0152258_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0152258_41	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0152258_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0152258_41	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0152258_43	UniRef90	UniRef90_UPI001897CA7D	single-stranded DNA-binding protein	NA
UHGV-0152258_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152258_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152258_44	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0152258_44	UniRef90	UniRef90_UPI00189B458A	dUTP diphosphatase	NA
UHGV-0152258_44	eggNOG-mapper	1352230.S6AVW3_9CAUD	dCTP diphosphatase activity	NA
UHGV-0152258_44	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0152258_44	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0152258_45	Structural annotation	PF04545, TIGR01636	NA	NA
UHGV-0152258_46	PHROG	phrog_24386	NA	unknown function
UHGV-0152258_46	eggNOG-mapper	511680.BUTYVIB_00647	COG NOG28949 non supervised orthologous group	NA
UHGV-0152258_46	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0152258_48	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0152258_48	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0152258_50	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0152258_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152258_50	UniRef90	UniRef90_UPI0009327EF4	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0152258_50	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0152258_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0152258_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152258_50	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0152258_51	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0152258_51	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0152258_51	UniRef90	UniRef90_UPI0009329361	DNA cytosine methyltransferase	NA
UHGV-0152258_51	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0152258_51	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0152258_51	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0152258_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0152258_51	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0152258_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152258_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152258_53	UniRef90	UniRef90_UPI000933C359	single-stranded DNA-binding protein	NA
UHGV-0152258_53	eggNOG-mapper	1211819.CALK01000023_gene1688	Single-stranded DNA-binding protein	NA
UHGV-0152258_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152258_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152258_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152258_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152258_53	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0152258_57	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0152258_57	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0152258_57	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-0152258_57	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0152258_58	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0152258_58	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0152258_58	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0152258_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0152258_58	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0152258_59	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0152258_59	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152258_59	UniRef90	UniRef90_UPI001899EB33	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0152258_59	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0152258_59	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0152258_59	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0152258_59	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0152258_60	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0152258_61	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0152258_61	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152258_61	UniRef90	UniRef90_A0A412G4J9	Recombinase RecT	NA
UHGV-0152258_61	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0152258_61	Pfam	PF03837	RecT family	RecT
UHGV-0152258_61	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0152258_61	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0152258_61	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0152258_62	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152258_62	UniRef90	UniRef90_UPI001F353DC5	YqaJ viral recombinase family protein	NA
UHGV-0152258_62	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0152258_62	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0152258_62	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0152258_62	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0152258_62	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0152258_65	UniRef90	UniRef90_UPI001899E818	glucosaminidase domain-containing protein	NA
UHGV-0152258_65	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0152258_65	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0152258_65	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0152258_66	UniRef90	UniRef90_UPI00093363A0	helix-turn-helix domain-containing protein	NA
UHGV-0152258_66	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0152258_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152258_67	UniRef90	UniRef90_UPI001898A404	helix-turn-helix transcriptional regulator	NA
UHGV-0152258_67	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0152258_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152258_67	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152258_67	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0152258_68	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0152258_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152258_68	UniRef90	UniRef90_UPI0009355DEA	helix-turn-helix domain-containing protein	NA
UHGV-0152258_68	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0152258_68	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152258_68	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152258_68	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA