UHGV-0152279

Genome information

Genome length 28,903 bps

CDS count 43

Completeness 97.63% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152279
vOTU ID	vOTU-010571
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_454997
BioSample	SAMN05971577
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.86
Jumbo phage	No

Genome content
Genome length	28,903 bps
GC content	49.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.42%
Average CDS length	624.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152279_1	UniRef90	UniRef90_A0A415DTV3	Asp23/Gls24 family envelope stress response protein	NA
UHGV-0152279_1	eggNOG-mapper	936375.HMPREF1152_0127	NA	NA
UHGV-0152279_1	COG	COG1302	NA	NA
UHGV-0152279_3	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0152279_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152279_4	PHROG	phrog_435	endolysin	lysis
UHGV-0152279_4	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152279_4	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152279_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0152279_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152279_4	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0152279_5	PHROG	phrog_1129	holin	lysis
UHGV-0152279_5	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0152279_5	eggNOG-mapper	1232447.BAHW02000005_gene155	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0152279_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0152279_5	Structural annotation	PF06946	NA	NA
UHGV-0152279_6	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0152279_7	PHROG	phrog_13890	NA	unknown function
UHGV-0152279_7	UniRef90	UniRef90_A0A849XQQ9	NA	NA
UHGV-0152279_7	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0152279_7	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0152279_9	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0152279_9	PHROG	phrog_25468	NA	unknown function
UHGV-0152279_9	eggNOG-mapper	1410624.JNKK01000017_gene1989	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0152279_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0152279_10	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0152279_13	Structural annotation	PF20458, TIGR02241, COG3499	NA	NA
UHGV-0152279_14	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0152279_14	UniRef90	UniRef90_A0A1H4RSW2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0152279_14	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-0152279_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0152279_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0152279_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0152279_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0152279_15	PHROG	phrog_709	NA	unknown function
UHGV-0152279_15	UniRef90	UniRef90_B7IYA6	Putative prophage pi2 protein 40	NA
UHGV-0152279_15	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-0152279_15	Structural annotation	PF11836	NA	NA
UHGV-0152279_16	PHROG	phrog_88	major tail protein	tail
UHGV-0152279_16	UniRef90	UniRef90_A0A7X6CWI9	Phage tail protein	NA
UHGV-0152279_16	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0152279_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0152279_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0152279_17	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-0152279_17	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0152279_18	UniRef90	UniRef90_A0A285G7N3	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0152279_18	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0152279_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0152279_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0152279_19	UniRef90	UniRef90_UPI0011DCF1F1	phage head closure protein	NA
UHGV-0152279_19	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-0152279_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0152279_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0152279_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0152279_20	PHROG	phrog_5223	neck protein	connector
UHGV-0152279_20	UniRef90	UniRef90_M1MA30	NA	NA
UHGV-0152279_20	eggNOG-mapper	931276.Cspa_c10180	NA	NA
UHGV-0152279_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0152279_20	Structural annotation	TIGR01560	NA	NA
UHGV-0152279_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152279_21	UniRef90	UniRef90_UPI00040EA8CF	phage major capsid protein	NA
UHGV-0152279_21	eggNOG-mapper	1123263.AUKY01000046_gene469	Phage capsid family	NA
UHGV-0152279_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152279_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152279_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152279_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152279_22	KOfam	K06904	NA	NA
UHGV-0152279_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0152279_22	UniRef90	UniRef90_E6MGY2	Phage prohead protease, HK97 family	NA
UHGV-0152279_22	eggNOG-mapper	887929.HMP0721_1266	Caudovirus prohead serine protease	NA
UHGV-0152279_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0152279_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0152279_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0152279_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0152279_23	UniRef90	UniRef90_A0A7X7AAU2	Phage portal protein	NA
UHGV-0152279_23	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-0152279_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0152279_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0152279_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0152279_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0152279_24	UniRef90	UniRef90_A0A1Y3R957	Terminase	NA
UHGV-0152279_24	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0152279_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0152279_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0152279_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0152279_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0152279_25	PHROG	phrog_1066	NA	unknown function
UHGV-0152279_25	UniRef90	UniRef90_A0A7G5C3E9	P27 family phage terminase small subunit	NA
UHGV-0152279_25	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0152279_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0152279_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0152279_26	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0152279_26	UniRef90	UniRef90_A0A351TQU6	HNH endonuclease	NA
UHGV-0152279_26	eggNOG-mapper	931626.Awo_c31080	HNH nucleases	NA
UHGV-0152279_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0152279_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0152279_26	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0152279_27	PHROG	phrog_21498	NA	unknown function
UHGV-0152279_27	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0152279_27	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-0152279_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0152279_27	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0152279_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152279_28	eggNOG-mapper	1095750.HMPREF9970_0179	NA	NA
UHGV-0152279_28	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0152279_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0152279_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152279_29	UniRef90	UniRef90_A0A1S1V6E1	Endodeoxyribonuclease RusA	NA
UHGV-0152279_29	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-0152279_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0152279_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0152279_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0152279_32	PHROG	phrog_6969	NA	unknown function
UHGV-0152279_32	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0152279_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0152279_32	Structural annotation	PF01978, MF_01819, TIGR01610, COG1510	NA	NA
UHGV-0152279_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152279_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152279_33	UniRef90	UniRef90_R5T0D9	Single-stranded DNA-binding protein	NA
UHGV-0152279_33	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-0152279_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152279_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152279_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152279_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152279_33	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0152279_39	PHROG	phrog_6058	NA	unknown function
UHGV-0152279_39	UniRef90	UniRef90_R6E1Y4	Modification methylase SinI	NA
UHGV-0152279_39	eggNOG-mapper	1111454.HMPREF1250_0785	NA	NA
UHGV-0152279_39	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0152279_41	UniRef90	UniRef90_A0A8B4HXZ0	Prophage pi2 protein 05	NA
UHGV-0152279_41	eggNOG-mapper	646413.C5IUM3_9CAUD	NA	NA
UHGV-0152279_41	Pfam	PF05339	NA	DUF739
UHGV-0152279_41	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0152279_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0152279_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0152279_42	UniRef90	UniRef90_A0A1I0BDF7	Helix-turn-helix	NA
UHGV-0152279_42	eggNOG-mapper	1122173.AXVL01000018_gene460	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152279_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152279_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152279_42	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0152279_43	KOfam	K14059	int; integrase	NA
UHGV-0152279_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0152279_43	UniRef90	UniRef90_A0A6N7X4W3	Site-specific integrase	NA
UHGV-0152279_43	eggNOG-mapper	742823.HMPREF9465_00188	Belongs to the 'phage' integrase family	NA
UHGV-0152279_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152279_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152279_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA