UHGV-0152341

Genome information

vOTU vOTU-022030

Genome length 33,983 bps

CDS count 44

Completeness 83.35% (medium-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152341
vOTU ID	vOTU-022030
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_493660
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.92
Jumbo phage	No

Genome content
Genome length	33,983 bps
GC content	45.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.05%
Average CDS length	732.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152341_1	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0152341_1	PHROG	phrog_7766	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0152341_1	UniRef90	UniRef90_W4UBP0	DNA polymerase I	NA
UHGV-0152341_1	eggNOG-mapper	546273.VEIDISOL_00701	DNA polymerase	NA
UHGV-0152341_1	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0152341_2	Structural annotation	PF18822	NA	NA
UHGV-0152341_3	PHROG	phrog_16315	NA	unknown function
UHGV-0152341_3	UniRef90	UniRef90_UPI00195FD5C6	PcfJ domain-containing protein	NA
UHGV-0152341_3	eggNOG-mapper	1262914.BN533_00797	PcfJ-like protein	NA
UHGV-0152341_3	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0152341_3	Structural annotation	PF14284	NA	NA
UHGV-0152341_4	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152341_4	UniRef90	UniRef90_A0A1G9QU34	Virulence-associated protein E	NA
UHGV-0152341_4	eggNOG-mapper	883156.HMPREF9282_00939	Virulence-associated protein E	NA
UHGV-0152341_4	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0152341_4	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0152341_4	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0152341_5	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152341_5	UniRef90	UniRef90_A0A6L6TS93	VRR-NUC domain-containing protein	NA
UHGV-0152341_5	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0152341_5	Structural annotation	PF08774, MF_00130, NF002584	NA	NA
UHGV-0152341_6	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-0152341_6	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152341_6	UniRef90	UniRef90_A0A6L6TN95	DEAD/DEAH box helicase	NA
UHGV-0152341_6	eggNOG-mapper	883156.HMPREF9282_00941	SNF2 family	NA
UHGV-0152341_6	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0152341_6	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0152341_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0152341_6	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0152341_6	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0152341_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-0152341_8	UniRef90	UniRef90_A0A6L6TNP4	NA	NA
UHGV-0152341_8	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0152341_8	Pfam	PF11753	NA	DUF3310
UHGV-0152341_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152341_9	UniRef90	UniRef90_UPI001CD33068	NA	NA
UHGV-0152341_9	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0152341_9	Pfam	PF07374	NA	DUF1492
UHGV-0152341_9	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0152341_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0152341_10	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0152341_10	UniRef90	UniRef90_UPI000F8CDB0C	terminase small subunit	NA
UHGV-0152341_10	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-0152341_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0152341_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0152341_10	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0152341_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152341_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0152341_11	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-0152341_11	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0152341_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0152341_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0152341_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0152341_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152341_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0152341_12	PHROG	phrog_145	portal protein	head and packaging
UHGV-0152341_12	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0152341_12	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0152341_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152341_13	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0152341_13	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-0152341_13	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0152341_13	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0152341_15	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0152341_15	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-0152341_15	Structural annotation	PF06810	NA	NA
UHGV-0152341_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0152341_16	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-0152341_16	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0152341_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0152341_17	PHROG	phrog_15682	NA	unknown function
UHGV-0152341_17	eggNOG-mapper	1294142.CINTURNW_1030	NA	NA
UHGV-0152341_18	UniRef90	UniRef90_A0A7R6VQ40	Phage tail protein	NA
UHGV-0152341_18	eggNOG-mapper	387092.NIS_0469	Phage virion morphogenesis	NA
UHGV-0152341_18	COG	COG5005	NA	NA
UHGV-0152341_18	Structural annotation	TIGR01725	NA	NA
UHGV-0152341_19	PHROG	phrog_19017	NA	unknown function
UHGV-0152341_19	eggNOG-mapper	1123489.AUAN01000010_gene356	NA	NA
UHGV-0152341_20	PHROG	phrog_18864	NA	unknown function
UHGV-0152341_20	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0152341_20	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0152341_21	PHROG	phrog_290	minor tail protein	tail
UHGV-0152341_21	UniRef90	UniRef90_UPI00195F5747	phage tail tube protein	NA
UHGV-0152341_21	eggNOG-mapper	888060.HMPREF9081_1545	NA	NA
UHGV-0152341_21	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0152341_21	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0152341_22	eggNOG-mapper	888060.HMPREF9081_1542	NA	NA
UHGV-0152341_23	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-0152341_23	UniRef90	UniRef90_UPI001D09F5D4	NA	NA
UHGV-0152341_23	eggNOG-mapper	1123489.AUAN01000010_gene352	NA	NA
UHGV-0152341_23	Pfam	PF08809	NA	DUF1799
UHGV-0152341_23	Structural annotation	PF08809	NA	NA
UHGV-0152341_24	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0152341_24	UniRef90	UniRef90_UPI000422D822	tape measure protein	NA
UHGV-0152341_24	eggNOG-mapper	1123489.AUAN01000010_gene351	tape measure	NA
UHGV-0152341_24	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0152341_24	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0152341_24	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0152341_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0152341_25	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0152341_25	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0152341_26	PHROG	phrog_18	minor tail protein	tail
UHGV-0152341_26	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0152341_26	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0152341_26	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0152341_26	COG	COG4672	Phage tail protein	NA
UHGV-0152341_26	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0152341_27	PHROG	phrog_329	minor tail protein	tail
UHGV-0152341_27	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0152341_27	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0152341_27	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0152341_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0152341_27	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0152341_28	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0152341_28	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0152341_28	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0152341_28	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0152341_28	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0152341_28	COG	COG1511	NA	NA
UHGV-0152341_28	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0152341_30	PHROG	phrog_33356	NA	unknown function
UHGV-0152341_30	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0152341_32	Structural annotation	PF00677	NA	NA
UHGV-0152341_33	UniRef90	UniRef90_A0A6L6TSJ6	Peptidase	NA
UHGV-0152341_33	eggNOG-mapper	484770.UFO1_1718	NA	NA
UHGV-0152341_34	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-0152341_35	eggNOG-mapper	1123511.KB905868_gene158	NA	NA
UHGV-0152341_35	Structural annotation	PF21277	NA	NA
UHGV-0152341_36	PHROG	phrog_774	NA	unknown function
UHGV-0152341_36	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0152341_36	Pfam	PF19791	NA	DUF6275
UHGV-0152341_42	PHROG	phrog_888	NA	unknown function
UHGV-0152341_42	UniRef90	UniRef90_C9LPC5	SHOCT domain-containing protein	NA
UHGV-0152341_42	eggNOG-mapper	592028.GCWU000321_01404	NA	NA
UHGV-0152341_42	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0152341_44	KOfam	K03327	TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family	NA
UHGV-0152341_44	PHROG	phrog_6241	NA	unknown function
UHGV-0152341_44	UniRef90	UniRef90_C9LPC8	MATE efflux family protein	NA
UHGV-0152341_44	eggNOG-mapper	592028.GCWU000321_01407	MATE efflux family protein	NA
UHGV-0152341_44	Pfam	PF01554	MatE	MatE
UHGV-0152341_44	NCBIFam	TIGR00797.1	MATE family efflux transporter	NA
UHGV-0152341_44	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-0152341_44	Structural annotation	PF03023, MF_00400, NF041801, COG0534	NA	NA