UHGV-0152379

Genome information

Genome length 41,282 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152379
vOTU ID	vOTU-046163
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_482309
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.27
Jumbo phage	No

Genome content
Genome length	41,282 bps
GC content	50.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	87.64%
Average CDS length	498.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152379_2	Structural annotation	PF08962	NA	NA
UHGV-0152379_4	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152379_4	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0152379_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0152379_5	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0152379_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0152379_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0152379_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0152379_6	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152379_6	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0152379_6	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0152379_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0152379_7	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152379_7	UniRef90	UniRef90_A0A417H726	HNH endonuclease	NA
UHGV-0152379_7	eggNOG-mapper	521000.PROVRETT_05968	HNH endonuclease	NA
UHGV-0152379_7	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0152379_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0152379_7	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-0152379_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152379_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152379_8	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0152379_8	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0152379_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152379_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152379_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152379_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152379_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0152379_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0152379_9	UniRef90	UniRef90_A0A6L5TYD7	DnaD domain protein	NA
UHGV-0152379_9	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0152379_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0152379_9	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0152379_10	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152379_10	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0152379_10	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0152379_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0152379_10	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0152379_11	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0152379_11	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0152379_11	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0152379_11	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0152379_11	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0152379_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152379_11	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0152379_12	PHROG	phrog_13321	NA	unknown function
UHGV-0152379_12	UniRef90	UniRef90_UPI00030D2C45	radical SAM protein	NA
UHGV-0152379_12	eggNOG-mapper	1007096.BAGW01000031_gene122	PFAM Radical SAM	NA
UHGV-0152379_12	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0152379_12	COG	COG1533	DNA repair photolyase	NA
UHGV-0152379_12	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-0152379_17	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0152379_17	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0152379_17	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0152379_21	PHROG	phrog_419	NA	unknown function
UHGV-0152379_21	UniRef90	UniRef90_A0A3F3A3T2	Gp9	NA
UHGV-0152379_21	eggNOG-mapper	1282664.H354_06646	NA	NA
UHGV-0152379_21	Structural annotation	PF14083	NA	NA
UHGV-0152379_22	PHROG	phrog_774	NA	unknown function
UHGV-0152379_22	UniRef90	UniRef90_U4KJB1	NA	NA
UHGV-0152379_22	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0152379_22	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0152379_23	PHROG	phrog_7839	NA	unknown function
UHGV-0152379_23	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0152379_23	Structural annotation	PF08860	NA	NA
UHGV-0152379_25	PHROG	phrog_25385	NA	unknown function
UHGV-0152379_25	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0152379_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152379_27	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0152379_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152379_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0152379_30	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0152379_30	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0152379_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0152379_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0152379_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0152379_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152379_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0152379_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152379_31	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0152379_31	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0152379_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152379_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152379_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152379_32	UniRef90	UniRef90_A0A417HAG8	Minor capsid protein	NA
UHGV-0152379_32	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0152379_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152379_32	COG	COG2369	NA	NA
UHGV-0152379_32	Structural annotation	PF06152	NA	NA
UHGV-0152379_33	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0152379_33	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0152379_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152379_34	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0152379_34	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0152379_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152379_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152379_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152379_34	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152379_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0152379_36	PHROG	phrog_3366	NA	unknown function
UHGV-0152379_36	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-0152379_36	Pfam	PF20536	NA	DUF6751
UHGV-0152379_36	Structural annotation	PF20536, COG5437	NA	NA
UHGV-0152379_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152379_37	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-0152379_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0152379_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0152379_37	Structural annotation	PF11114	NA	NA
UHGV-0152379_38	PHROG	phrog_3266	tail completion	connector
UHGV-0152379_38	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0152379_38	Structural annotation	PF12691	NA	NA
UHGV-0152379_39	PHROG	phrog_3099	NA	unknown function
UHGV-0152379_39	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0152379_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0152379_40	PHROG	phrog_11299	NA	unknown function
UHGV-0152379_40	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0152379_40	Structural annotation	PF10666	NA	NA
UHGV-0152379_41	PHROG	phrog_706	NA	unknown function
UHGV-0152379_41	UniRef90	UniRef90_UPI00164ABC94	Gp15 family bacteriophage protein	NA
UHGV-0152379_41	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0152379_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0152379_41	Structural annotation	PF06854	NA	NA
UHGV-0152379_42	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0152379_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152379_42	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0152379_42	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-0152379_42	COG	COG1511	NA	NA
UHGV-0152379_43	PHROG	phrog_1194	NA	unknown function
UHGV-0152379_43	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0152379_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0152379_44	PHROG	phrog_32744	NA	unknown function
UHGV-0152379_44	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0152379_44	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0152379_46	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0152379_47	PHROG	phrog_10898	NA	unknown function
UHGV-0152379_47	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0152379_47	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0152379_47	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0152379_47	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0152379_48	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0152379_52	PHROG	phrog_199	holin	lysis
UHGV-0152379_52	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-0152379_52	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0152379_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0152379_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0152379_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0152379_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0152379_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152379_53	PHROG	phrog_670	endolysin	lysis
UHGV-0152379_53	UniRef90	UniRef90_A0A417HAK3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152379_53	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0152379_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0152379_53	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0152379_53	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0152379_54	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0152379_54	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0152379_56	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0152379_57	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0152379_58	PHROG	phrog_16490	NA	unknown function
UHGV-0152379_58	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0152379_59	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0152379_60	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0152379_61	KOfam	K14059	int; integrase	NA
UHGV-0152379_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0152379_61	UniRef90	UniRef90_A0A417H7X9	Site-specific integrase	NA
UHGV-0152379_61	eggNOG-mapper	1408437.JNJN01000084_gene1284	Belongs to the 'phage' integrase family	NA
UHGV-0152379_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0152379_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152379_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0152379_61	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0152379_62	PHROG	phrog_2546	NA	unknown function
UHGV-0152379_62	UniRef90	UniRef90_UPI0008A4E921	ribosomal protein L7/L12	NA
UHGV-0152379_62	eggNOG-mapper	1582156.A0A0A8WFW4_9CAUD	NA	NA
UHGV-0152379_62	Structural annotation	PF13240, TIGR04165	NA	NA
UHGV-0152379_64	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0152379_64	Structural annotation	PF06152	NA	NA
UHGV-0152379_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0152379_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152379_65	UniRef90	UniRef90_A0A845MWJ4	Helix-turn-helix domain-containing protein	NA
UHGV-0152379_65	eggNOG-mapper	349161.Dred_3095	PFAM helix-turn-helix domain protein	NA
UHGV-0152379_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152379_65	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152379_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0152379_66	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0152379_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152379_66	UniRef90	UniRef90_A0A1C7GLH4	Transcriptional regulator	NA
UHGV-0152379_66	eggNOG-mapper	1157490.EL26_23385	sequence-specific DNA binding	NA
UHGV-0152379_66	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0152379_66	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152379_66	Structural annotation	PF01381, NF041951, COG1476	NA	NA