UHGV-0152428

Genome information

vOTU vOTU-022032

Genome length 22,750 bps

CDS count 34

Completeness 60.58% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152428
vOTU ID	vOTU-022032
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_485734
BioSample	SAMN06110414
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.08
Jumbo phage	No

Genome content
Genome length	22,750 bps
GC content	44.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	91.67%
Average CDS length	622.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152428_2	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152428_2	UniRef90	UniRef90_A0A173YJM2	VRR-NUC domain	NA
UHGV-0152428_2	eggNOG-mapper	1401067.HMPREF0872_06855	VRR_NUC	NA
UHGV-0152428_2	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0152428_2	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0152428_3	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0152428_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152428_3	UniRef90	UniRef90_A0A396L8U5	ATP-dependent helicase	NA
UHGV-0152428_3	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0152428_3	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0152428_3	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0152428_3	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0152428_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0152428_3	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0152428_4	Structural annotation	MF_00773	NA	NA
UHGV-0152428_5	PHROG	phrog_15198	NA	unknown function
UHGV-0152428_5	UniRef90	UniRef90_A0A414U7F1	NA	NA
UHGV-0152428_5	Pfam	PF04448	NA	DUF551
UHGV-0152428_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152428_7	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0152428_7	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0152428_7	Structural annotation	MF_00307	NA	NA
UHGV-0152428_9	PHROG	phrog_2412	NA	unknown function
UHGV-0152428_9	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0152428_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152428_10	PHROG	phrog_10250	NA	unknown function
UHGV-0152428_10	UniRef90	UniRef90_A0A3R6AA11	PBSX family phage terminase large subunit	NA
UHGV-0152428_10	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0152428_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0152428_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0152428_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152428_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0152428_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152428_11	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-0152428_11	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0152428_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152428_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152428_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152428_12	UniRef90	UniRef90_A0A173TSV6	Phage minor capsid protein 2	NA
UHGV-0152428_12	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0152428_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152428_12	COG	COG2369	NA	NA
UHGV-0152428_14	PHROG	phrog_12728	NA	unknown function
UHGV-0152428_14	UniRef90	UniRef90_A0A6H0X686	Putative signal peptide-containing lipoprotein	NA
UHGV-0152428_14	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0152428_15	KOfam	K07584	NA	NA
UHGV-0152428_15	PHROG	phrog_4478	peptidase	other
UHGV-0152428_15	UniRef90	UniRef90_A0A3R5ZFB5	Ribosomal-processing cysteine protease Prp	NA
UHGV-0152428_15	eggNOG-mapper	471875.RUMLAC_01542	Cysteine protease Prp	NA
UHGV-0152428_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0152428_15	COG	COG2868	NA	NA
UHGV-0152428_15	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0152428_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0152428_16	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0152428_16	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0152428_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152428_17	UniRef90	UniRef90_A0A173TT07	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152428_17	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0152428_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152428_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152428_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0152428_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152428_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0152428_18	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0152428_19	PHROG	phrog_3366	NA	unknown function
UHGV-0152428_19	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0152428_19	Pfam	PF20536	NA	DUF6751
UHGV-0152428_19	Structural annotation	PF20536	NA	NA
UHGV-0152428_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152428_20	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0152428_20	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0152428_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0152428_20	Structural annotation	PF11114	NA	NA
UHGV-0152428_21	PHROG	phrog_3266	tail completion	connector
UHGV-0152428_21	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0152428_21	Structural annotation	PF12691	NA	NA
UHGV-0152428_22	PHROG	phrog_3099	NA	unknown function
UHGV-0152428_22	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0152428_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0152428_23	PHROG	phrog_4450	NA	unknown function
UHGV-0152428_23	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0152428_23	Pfam	PF20378	NA	DUF6673
UHGV-0152428_23	Structural annotation	PF20378	NA	NA
UHGV-0152428_24	PHROG	phrog_706	NA	unknown function
UHGV-0152428_24	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0152428_24	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0152428_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0152428_24	Structural annotation	PF06854	NA	NA
UHGV-0152428_25	PHROG	phrog_5602	NA	unknown function
UHGV-0152428_25	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0152428_25	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0152428_26	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0152428_26	UniRef90	UniRef90_A0A173TTL9	Phage-related protein	NA
UHGV-0152428_26	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0152428_26	COG	COG1511	NA	NA
UHGV-0152428_26	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0152428_27	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0152428_27	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0152428_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0152428_28	UniRef90	UniRef90_UPI001E30CCA1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0152428_28	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0152428_28	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0152428_29	PHROG	phrog_538	minor tail protein	tail
UHGV-0152428_29	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0152428_30	PHROG	phrog_9994	NA	unknown function
UHGV-0152428_30	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0152428_30	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0152428_30	Structural annotation	PF18573, PF20747, NF033147	NA	NA
UHGV-0152428_31	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0152428_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0152428_31	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0152428_31	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0152428_31	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0152428_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152428_31	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0152428_31	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0152428_33	PHROG	phrog_12931	NA	unknown function
UHGV-0152428_33	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0152428_33	Structural annotation	PF10618	NA	NA
UHGV-0152428_34	PHROG	phrog_1382	NA	unknown function
UHGV-0152428_34	eggNOG-mapper	411461.DORFOR_00727	NA	NA