UHGV-0152478

Genome information

Genome length 37,858 bps

CDS count 49

Completeness 97.05% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152478
vOTU ID	vOTU-010575
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_458517
BioSample	SAMN05971417
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.08
Jumbo phage	No

Genome content
Genome length	37,858 bps
GC content	41.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	89.22%
Average CDS length	692.57 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152478_1	UniRef90	UniRef90_UPI000F537F99	zinc ribbon domain-containing protein	NA
UHGV-0152478_1	eggNOG-mapper	1160721.RBI_I00279	NA	NA
UHGV-0152478_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152478_2	PHROG	phrog_1794	amidase	lysis
UHGV-0152478_2	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0152478_2	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152478_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0152478_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0152478_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152478_2	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0152478_3	PHROG	phrog_881	holin	lysis
UHGV-0152478_3	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0152478_3	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0152478_3	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0152478_3	Structural annotation	PF16938	NA	NA
UHGV-0152478_4	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0152478_4	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0152478_6	Structural annotation	PF08931	NA	NA
UHGV-0152478_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0152478_8	PHROG	phrog_1194	NA	unknown function
UHGV-0152478_8	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0152478_8	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0152478_8	Pfam	PF20458	NA	DUF6711
UHGV-0152478_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0152478_9	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0152478_9	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0152478_9	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0152478_9	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0152478_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0152478_10	PHROG	phrog_5319	outer membrane protein	other
UHGV-0152478_10	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0152478_10	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0152478_10	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0152478_10	COG	COG3103	NA	NA
UHGV-0152478_10	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0152478_11	PHROG	phrog_8355	NA	unknown function
UHGV-0152478_11	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-0152478_11	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-0152478_12	PHROG	phrog_8300	NA	unknown function
UHGV-0152478_12	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0152478_12	Structural annotation	PF06854	NA	NA
UHGV-0152478_13	PHROG	phrog_820	major tail protein	tail
UHGV-0152478_13	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0152478_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0152478_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0152478_14	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0152478_14	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0152478_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0152478_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0152478_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152478_15	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0152478_16	PHROG	phrog_8710	NA	unknown function
UHGV-0152478_16	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0152478_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0152478_17	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0152478_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0152478_18	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0152478_18	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0152478_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0152478_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0152478_19	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0152478_20	PHROG	phrog_2616	NA	unknown function
UHGV-0152478_20	Structural annotation	PF01281	NA	NA
UHGV-0152478_21	PHROG	phrog_20195	NA	unknown function
UHGV-0152478_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152478_22	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-0152478_22	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0152478_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152478_22	COG	COG2369	NA	NA
UHGV-0152478_22	Structural annotation	PF06152	NA	NA
UHGV-0152478_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152478_23	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0152478_23	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0152478_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152478_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152478_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0152478_24	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0152478_24	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0152478_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0152478_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152478_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0152478_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0152478_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0152478_25	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0152478_25	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0152478_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0152478_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0152478_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0152478_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152478_26	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0152478_26	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0152478_26	Pfam	PF07374	NA	DUF1492
UHGV-0152478_26	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0152478_27	eggNOG-mapper	1235802.C823_04693	NA	NA
UHGV-0152478_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0152478_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152478_29	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0152478_29	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0152478_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152478_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152478_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152478_29	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0152478_31	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0152478_33	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0152478_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152478_34	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0152478_34	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0152478_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0152478_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0152478_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0152478_35	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0152478_35	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0152478_35	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0152478_35	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0152478_35	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0152478_35	Pfam	PF13481	AAA domain	AAA_25
UHGV-0152478_35	COG	COG3598	RecA-family ATPase	NA
UHGV-0152478_35	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0152478_36	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0152478_36	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152478_36	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0152478_36	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0152478_36	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0152478_36	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0152478_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0152478_36	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0152478_36	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0152478_37	PHROG	phrog_2698	NA	unknown function
UHGV-0152478_37	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0152478_37	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0152478_37	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0152478_38	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152478_38	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0152478_38	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0152478_38	Pfam	PF13479	AAA domain	AAA_24
UHGV-0152478_38	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0152478_40	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0152478_40	PHROG	phrog_1499	NA	unknown function
UHGV-0152478_40	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0152478_40	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0152478_40	Pfam	PF13476	AAA domain	AAA_23
UHGV-0152478_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0152478_40	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0152478_42	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0152478_42	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0152478_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0152478_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0152478_42	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0152478_42	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0152478_44	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0152478_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152478_45	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-0152478_45	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-0152478_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152478_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152478_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0152478_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152478_46	UniRef90	UniRef90_A0A2N0ULR3	HTH-type transcriptional regulator ImmR	NA
UHGV-0152478_46	eggNOG-mapper	649747.HMPREF0083_01078	Transcriptional regulator	NA
UHGV-0152478_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152478_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152478_47	PHROG	phrog_1914	NA	unknown function
UHGV-0152478_47	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-0152478_47	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0152478_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0152478_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0152478_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0152478_48	KOfam	K14059	int; integrase	NA
UHGV-0152478_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0152478_48	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0152478_48	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0152478_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152478_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0152478_48	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0152478_49	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0152478_49	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0152478_49	UniRef90	UniRef90_A0A2N0UK65	Sigma-24	NA
UHGV-0152478_49	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0152478_49	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0152478_49	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0152478_49	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0152478_49	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0152478_49	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA