UHGV-0152522

Genome information

Genome length 41,354 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152522
vOTU ID	vOTU-010576
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453695
BioSample	SAMN05971693
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.29
Jumbo phage	No

Genome content
Genome length	41,354 bps
GC content	45.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.21%
Average CDS length	602.71 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152522_1	KOfam	K16568	exoZ; exopolysaccharide production protein ExoZ	NA
UHGV-0152522_1	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0152522_1	UniRef90	UniRef90_A0A355W2M2	Acyl_transf_3 domain-containing protein	NA
UHGV-0152522_1	eggNOG-mapper	1410632.JHWW01000004_gene1653	Acyltransferase family	NA
UHGV-0152522_1	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0152522_1	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0152522_3	PHROG	phrog_2649	endolysin	lysis
UHGV-0152522_3	UniRef90	UniRef90_R6C8U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152522_3	eggNOG-mapper	411902.CLOBOL_05642	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0152522_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0152522_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0152522_3	Structural annotation	COG3409	NA	NA
UHGV-0152522_4	PHROG	phrog_199	holin	lysis
UHGV-0152522_4	UniRef90	UniRef90_A0A3D4HRA5	Holin	NA
UHGV-0152522_4	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0152522_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0152522_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0152522_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0152522_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0152522_5	PHROG	phrog_17180	NA	unknown function
UHGV-0152522_5	eggNOG-mapper	457424.BFAG_02437	NA	NA
UHGV-0152522_5	Structural annotation	PF14282	NA	NA
UHGV-0152522_6	UniRef90	UniRef90_A0A174CKQ2	Collagen triple helix repeat (20 copies)	NA
UHGV-0152522_6	eggNOG-mapper	1235793.C809_01950	Phage tail-collar fibre protein	NA
UHGV-0152522_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0152522_6	Structural annotation	PF08931	NA	NA
UHGV-0152522_7	PHROG	phrog_17196	kinase	other
UHGV-0152522_7	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0152522_7	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0152522_9	PHROG	phrog_18190	NA	unknown function
UHGV-0152522_9	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-0152522_9	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0152522_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0152522_10	PHROG	phrog_1194	NA	unknown function
UHGV-0152522_10	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0152522_10	Pfam	PF20458	NA	DUF6711
UHGV-0152522_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0152522_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152522_11	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0152522_11	COG	COG1511	NA	NA
UHGV-0152522_12	PHROG	phrog_706	NA	unknown function
UHGV-0152522_12	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-0152522_12	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0152522_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0152522_12	Structural annotation	PF06854	NA	NA
UHGV-0152522_13	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0152522_14	PHROG	phrog_3099	NA	unknown function
UHGV-0152522_14	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0152522_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0152522_15	PHROG	phrog_3266	tail completion	connector
UHGV-0152522_15	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-0152522_15	Structural annotation	PF12691	NA	NA
UHGV-0152522_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152522_16	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-0152522_16	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0152522_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0152522_16	Structural annotation	PF11114	NA	NA
UHGV-0152522_17	PHROG	phrog_3366	NA	unknown function
UHGV-0152522_17	Pfam	PF20536	NA	DUF6751
UHGV-0152522_17	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0152522_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0152522_19	PHROG	phrog_212	major head protein	head and packaging
UHGV-0152522_19	UniRef90	UniRef90_A0A416HMC2	Phage capsid protein	NA
UHGV-0152522_19	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0152522_19	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0152522_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0152522_20	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0152522_20	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0152522_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0152522_20	Structural annotation	PF06810	NA	NA
UHGV-0152522_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152522_22	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0152522_22	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0152522_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152522_22	COG	COG2369	NA	NA
UHGV-0152522_22	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0152522_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152522_23	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0152522_23	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0152522_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152522_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152522_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0152522_24	UniRef90	UniRef90_A0A373K1N0	Terminase_3 domain-containing protein	NA
UHGV-0152522_24	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0152522_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0152522_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152522_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0152522_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0152522_25	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0152522_25	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0152522_25	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0152522_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0152522_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0152522_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0152522_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0152522_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0152522_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0152522_27	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0152522_27	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0152522_27	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0152522_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152522_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0152522_27	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0152522_30	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-0152522_30	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0152522_30	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0152522_31	PHROG	phrog_8538	NA	unknown function
UHGV-0152522_31	eggNOG-mapper	1121121.KB894312_gene3170	NA	NA
UHGV-0152522_32	PHROG	phrog_33451	NA	unknown function
UHGV-0152522_32	Structural annotation	PF07870	NA	NA
UHGV-0152522_34	UniRef90	UniRef90_A0A6L5YG44	NA	NA
UHGV-0152522_34	eggNOG-mapper	1235800.C819_00236	NA	NA
UHGV-0152522_34	Pfam	PF14199	NA	DUF4317
UHGV-0152522_34	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0152522_35	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0152522_35	PHROG	phrog_3502	NA	unknown function
UHGV-0152522_35	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-0152522_35	eggNOG-mapper	552398.HMPREF0866_01383	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0152522_35	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0152522_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152522_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0152522_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0152522_36	UniRef90	UniRef90_A0A6L5YG72	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0152522_36	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0152522_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0152522_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0152522_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0152522_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0152522_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0152522_37	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152522_37	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0152522_37	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0152522_37	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0152522_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152522_37	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0152522_37	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0152522_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152522_40	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0152522_40	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0152522_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152522_40	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0152522_42	PHROG	phrog_874	NA	unknown function
UHGV-0152522_42	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0152522_42	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0152522_45	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0152522_45	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-0152522_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0152522_45	Structural annotation	PF04492, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0152522_47	PHROG	phrog_7566	NA	unknown function
UHGV-0152522_47	UniRef90	UniRef90_A0A3B9CDC4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0152522_47	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0152522_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0152522_48	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0152522_49	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152522_49	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0152522_49	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0152522_50	PHROG	phrog_674	NA	unknown function
UHGV-0152522_50	UniRef90	UniRef90_A0A6L5YG56	NA	NA
UHGV-0152522_50	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0152522_50	Pfam	PF07083	NA	DUF1351
UHGV-0152522_50	Structural annotation	PF07083	NA	NA
UHGV-0152522_54	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0152522_58	UniRef90	UniRef90_A0A3D5L8I7	DNA-binding protein	NA
UHGV-0152522_58	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0152522_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0152522_59	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0152522_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152522_59	UniRef90	UniRef90_A0A3R6ILK5	XRE family transcriptional regulator	NA
UHGV-0152522_59	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0152522_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0152522_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152522_59	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0152522_60	PHROG	phrog_87	metallo-protease	other
UHGV-0152522_60	UniRef90	UniRef90_A0A3B9CDB4	Peptidase_M78 domain-containing protein	NA
UHGV-0152522_60	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0152522_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0152522_60	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0152522_60	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0152522_61	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0152522_61	UniRef90	UniRef90_UPI001EDEC690	NA	NA
UHGV-0152522_61	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-0152522_61	Structural annotation	PF12978	NA	NA
UHGV-0152522_62	KOfam	K14059	int; integrase	NA
UHGV-0152522_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0152522_62	UniRef90	UniRef90_A0A3C1J212	Integrase	NA
UHGV-0152522_62	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0152522_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152522_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152522_62	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA