UHGV-0152702

Genome information

vOTU vOTU-022036

Genome length 21,959 bps

CDS count 29

Completeness 89.93% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152702
vOTU ID	vOTU-022036
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_486864
BioSample	SAMN06110168
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.76
Jumbo phage	No

Genome content
Genome length	21,959 bps
GC content	40.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.29%
Average CDS length	702.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152702_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0152702_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0152702_1	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0152702_1	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0152702_1	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0152702_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0152702_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0152702_1	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0152702_2	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0152702_2	Structural annotation	PF15597	NA	NA
UHGV-0152702_3	PHROG	phrog_6058	NA	unknown function
UHGV-0152702_3	eggNOG-mapper	1260356.D920_00020	NA	NA
UHGV-0152702_3	Structural annotation	NF033787	NA	NA
UHGV-0152702_6	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0152702_6	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0152702_6	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0152702_6	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0152702_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0152702_6	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0152702_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0152702_7	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0152702_7	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0152702_7	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0152702_7	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0152702_7	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0152702_7	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0152702_7	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0152702_7	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0152702_8	PHROG	phrog_24518	NA	unknown function
UHGV-0152702_8	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0152702_9	PHROG	phrog_824	NA	unknown function
UHGV-0152702_9	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0152702_9	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0152702_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0152702_9	Structural annotation	PF08774	NA	NA
UHGV-0152702_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0152702_12	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0152702_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0152702_13	PHROG	phrog_31049	NA	unknown function
UHGV-0152702_13	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0152702_13	Structural annotation	TIGR01636	NA	NA
UHGV-0152702_14	PHROG	phrog_1066	NA	unknown function
UHGV-0152702_14	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-0152702_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0152702_15	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-0152702_15	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0152702_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0152702_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0152702_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0152702_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0152702_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0152702_16	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-0152702_16	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0152702_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0152702_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0152702_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0152702_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0152702_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0152702_17	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0152702_17	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0152702_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0152702_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0152702_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0152702_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152702_18	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-0152702_18	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0152702_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152702_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152702_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152702_19	PHROG	phrog_5223	neck protein	connector
UHGV-0152702_19	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0152702_19	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0152702_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0152702_20	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-0152702_20	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0152702_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0152702_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0152702_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0152702_21	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0152702_21	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0152702_21	Structural annotation	TIGR01725	NA	NA
UHGV-0152702_22	Structural annotation	PF12691	NA	NA
UHGV-0152702_23	PHROG	phrog_885	major tail protein	tail
UHGV-0152702_23	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0152702_23	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0152702_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0152702_24	PHROG	phrog_1021	NA	unknown function
UHGV-0152702_26	PHROG	phrog_23464	NA	unknown function
UHGV-0152702_26	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0152702_26	COG	COG5283	Phage-related tail protein	NA
UHGV-0152702_26	Structural annotation	COG3941	NA	NA
UHGV-0152702_27	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0152702_27	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0152702_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-0152702_27	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0152702_28	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0152702_28	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0152702_28	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0152702_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0152702_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0152702_28	COG	COG4926	Phage-related protein	NA
UHGV-0152702_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0152702_29	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0152702_29	Pfam	PF10651	BppU N-terminal domain	BppU_N