UHGV-0152769

Genome information

Genome length 29,451 bps

CDS count 45

Completeness 51.71% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152769
vOTU ID	vOTU-027550
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497458
BioSample	SAMN06110322
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.16
Jumbo phage	No

Genome content
Genome length	29,451 bps
GC content	36.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.49%
Average CDS length	615.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152769_1	PHROG	phrog_4433	NA	unknown function
UHGV-0152769_1	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0152769_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0152769_1	Structural annotation	NF000318	NA	NA
UHGV-0152769_2	PHROG	phrog_2164	NA	unknown function
UHGV-0152769_3	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0152769_3	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152769_3	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0152769_3	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0152769_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-0152769_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0152769_3	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0152769_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152769_5	PHROG	phrog_26861	NA	unknown function
UHGV-0152769_5	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0152769_5	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0152769_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152769_5	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0152769_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152769_5	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0152769_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0152769_8	Structural annotation	PF10552	NA	NA
UHGV-0152769_9	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0152769_9	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0152769_9	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0152769_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0152769_9	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0152769_9	COG	COG3617	Prophage antirepressor	NA
UHGV-0152769_9	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0152769_11	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-0152769_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152769_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152769_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0152769_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152769_12	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-0152769_12	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0152769_12	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0152769_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152769_12	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0152769_13	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-0152769_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0152769_16	PHROG	phrog_6745	endolysin	lysis
UHGV-0152769_16	UniRef90	UniRef90_A0A1Q6KJN7	LysM domain-containing protein	NA
UHGV-0152769_16	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0152769_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0152769_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0152769_16	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0152769_18	PHROG	phrog_6616	tail protein	tail
UHGV-0152769_18	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0152769_18	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0152769_18	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0152769_18	COG	COG4926	Phage-related protein	NA
UHGV-0152769_18	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0152769_19	Structural annotation	PF07761	NA	NA
UHGV-0152769_20	PHROG	phrog_1194	NA	unknown function
UHGV-0152769_20	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0152769_20	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0152769_23	PHROG	phrog_23726	NA	unknown function
UHGV-0152769_23	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-0152769_23	eggNOG-mapper	1384484.AEQU_1334	cell wall organization	NA
UHGV-0152769_23	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0152769_24	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0152769_25	PHROG	phrog_28918	NA	unknown function
UHGV-0152769_25	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0152769_25	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0152769_27	PHROG	phrog_36112	NA	unknown function
UHGV-0152769_27	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0152769_27	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0152769_27	Structural annotation	PF16478	NA	NA
UHGV-0152769_29	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0152769_29	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0152769_30	Structural annotation	PF05657	NA	NA
UHGV-0152769_31	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0152769_31	AcrCatalog	cluster_24841	NA	NA
UHGV-0152769_32	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0152769_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0152769_33	PHROG	phrog_1129	holin	lysis
UHGV-0152769_33	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0152769_33	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0152769_33	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0152769_33	Structural annotation	PF06946	NA	NA
UHGV-0152769_34	PHROG	phrog_1863	NA	unknown function
UHGV-0152769_34	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0152769_35	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0152769_36	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0152769_36	Structural annotation	PF21169	NA	NA
UHGV-0152769_37	PHROG	phrog_29	major head protein	head and packaging
UHGV-0152769_37	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0152769_37	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0152769_37	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0152769_37	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0152769_38	PHROG	phrog_909	major head protein	head and packaging
UHGV-0152769_38	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0152769_39	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0152769_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0152769_40	UniRef90	UniRef90_R7BGE4	SPP1 family phage portal protein	NA
UHGV-0152769_40	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152769_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152769_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0152769_41	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0152769_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152769_42	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0152769_42	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0152769_42	Pfam	PF07374	NA	DUF1492
UHGV-0152769_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0152769_42	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0152769_43	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152769_43	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0152769_43	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0152769_43	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0152769_43	COG	COG5410	NA	NA
UHGV-0152769_43	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA