UHGV-0152830

Genome information

Genome length 33,360 bps

CDS count 63

Completeness 74.29% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152830
vOTU ID	vOTU-027554
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_498005
BioSample	SAMN06110155
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.02
Jumbo phage	No

Genome content
Genome length	33,360 bps
GC content	54.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	86.57%
Average CDS length	463.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152830_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0152830_1	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0152830_1	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0152830_1	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0152830_1	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0152830_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0152830_1	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0152830_1	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0152830_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0152830_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0152830_3	UniRef90	UniRef90_A0A0U2UH00	Xre family transcriptional regulator	NA
UHGV-0152830_3	eggNOG-mapper	1444310.JANV01000024_gene1355	Peptidase S24-like	NA
UHGV-0152830_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152830_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152830_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0152830_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0152830_4	UniRef90	UniRef90_UPI000F62C44C	helix-turn-helix domain-containing protein	NA
UHGV-0152830_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0152830_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152830_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0152830_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0152830_5	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0152830_6	Structural annotation	COG3311	NA	NA
UHGV-0152830_8	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0152830_8	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0152830_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0152830_11	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0152830_11	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0152830_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0152830_11	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0152830_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152830_12	UniRef90	UniRef90_A0A7U9PED5	ERF superfamily protein	NA
UHGV-0152830_12	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0152830_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0152830_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152830_12	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0152830_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0152830_13	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0152830_13	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0152830_13	Structural annotation	PF05772	NA	NA
UHGV-0152830_14	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0152830_14	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152830_14	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0152830_14	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0152830_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0152830_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152830_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152830_15	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0152830_15	eggNOG-mapper	1203606.HMPREF1526_02270	Single-stranded DNA-binding protein	NA
UHGV-0152830_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152830_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152830_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152830_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152830_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0152830_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0152830_16	UniRef90	UniRef90_A0A2A6ZGI2	HTH gntR-type domain-containing protein	NA
UHGV-0152830_16	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0152830_16	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0152830_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0152830_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152830_18	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0152830_18	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0152830_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0152830_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0152830_19	eggNOG-mapper	279238.Saro_2694	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0152830_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0152830_20	PHROG	phrog_3136	NA	unknown function
UHGV-0152830_20	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0152830_20	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0152830_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0152830_20	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0152830_22	PHROG	phrog_22543	NA	unknown function
UHGV-0152830_23	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0152830_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0152830_24	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0152830_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0152830_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0152830_24	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0152830_25	PHROG	phrog_236	nucleotide kinase	other
UHGV-0152830_25	UniRef90	UniRef90_A0A845MY30	NA	NA
UHGV-0152830_25	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0152830_25	Pfam	PF11753	NA	DUF3310
UHGV-0152830_25	Structural annotation	PF11753	NA	NA
UHGV-0152830_26	PHROG	phrog_774	NA	unknown function
UHGV-0152830_26	UniRef90	UniRef90_U4KJB1	NA	NA
UHGV-0152830_26	eggNOG-mapper	1042156.CXIVA_01820	NA	NA
UHGV-0152830_28	PHROG	phrog_25385	NA	unknown function
UHGV-0152830_28	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0152830_29	KOfam	K03744	lemA; LemA protein	NA
UHGV-0152830_29	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0152830_29	UniRef90	UniRef90_A0A417TP98	LemA family protein	NA
UHGV-0152830_29	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0152830_29	Pfam	PF04011	LemA family	LemA
UHGV-0152830_29	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0152830_29	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0152830_30	PHROG	phrog_3886	NA	unknown function
UHGV-0152830_30	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-0152830_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152830_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0152830_33	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0152830_34	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152830_34	UniRef90	UniRef90_UPI00195ADA30	AP2 domain-containing protein	NA
UHGV-0152830_34	eggNOG-mapper	246199.CUS_5638	NA	NA
UHGV-0152830_34	Pfam	PF00847	AP2 domain	AP2
UHGV-0152830_35	PHROG	phrog_25567	NA	unknown function
UHGV-0152830_35	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0152830_35	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0152830_35	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0152830_40	eggNOG-mapper	658659.HMPREF0983_00103	NA	NA
UHGV-0152830_40	Structural annotation	PF18847	NA	NA
UHGV-0152830_41	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0152830_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0152830_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0152830_42	UniRef90	UniRef90_A0A2V2FED9	Terminase small subunit	NA
UHGV-0152830_42	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0152830_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0152830_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0152830_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0152830_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152830_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0152830_43	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-0152830_43	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0152830_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0152830_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0152830_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152830_43	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0152830_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-0152830_44	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0152830_44	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0152830_47	PHROG	phrog_35275	NA	unknown function
UHGV-0152830_47	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0152830_48	PHROG	phrog_24113	NA	unknown function
UHGV-0152830_48	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0152830_49	PHROG	phrog_371	major head protein	head and packaging
UHGV-0152830_49	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0152830_49	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0152830_49	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0152830_49	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152830_50	PHROG	phrog_13046	NA	unknown function
UHGV-0152830_50	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0152830_50	Structural annotation	PF20387	NA	NA
UHGV-0152830_51	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0152830_51	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0152830_51	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0152830_52	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0152830_52	PHROG	phrog_819	tail protein	tail
UHGV-0152830_52	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0152830_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0152830_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0152830_53	PHROG	phrog_24451	NA	unknown function
UHGV-0152830_53	eggNOG-mapper	189425.PGRAT_24000	NA	NA
UHGV-0152830_54	PHROG	phrog_1382	NA	unknown function
UHGV-0152830_54	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-0152830_56	PHROG	phrog_1863	NA	unknown function
UHGV-0152830_56	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0152830_56	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0152830_57	PHROG	phrog_297	holin	lysis
UHGV-0152830_57	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0152830_57	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0152830_57	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0152830_57	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0152830_57	COG	COG5546	NA	NA
UHGV-0152830_57	Structural annotation	COG5546	NA	NA
UHGV-0152830_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152830_58	PHROG	phrog_670	endolysin	lysis
UHGV-0152830_58	UniRef90	UniRef90_A0A417HAK3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152830_58	eggNOG-mapper	97138.C820_00588	Ami_2	NA
UHGV-0152830_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0152830_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0152830_58	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0152830_59	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0152830_59	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0152830_59	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0152830_61	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0152830_62	eggNOG-mapper	476272.RUMHYD_01953	NA	NA