UHGV-0152922

Genome information

Genome length 31,444 bps

CDS count 52

Completeness 75.55% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152922
vOTU ID	vOTU-027558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_496289
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.13
Jumbo phage	No

Genome content
Genome length	31,444 bps
GC content	53.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.79%
Average CDS length	557.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152922_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0152922_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0152922_1	UniRef90	UniRef90_A0A7C1PXZ0	Site-specific DNA-methyltransferase	NA
UHGV-0152922_1	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0152922_1	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0152922_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152922_1	COG	COG0863	DNA modification methylase	NA
UHGV-0152922_3	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0152922_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0152922_4	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0152922_4	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0152922_4	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0152922_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0152922_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0152922_7	Structural annotation	PF19885	NA	NA
UHGV-0152922_10	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0152922_10	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0152922_12	eggNOG-mapper	665956.HMPREF1032_00651	NA	NA
UHGV-0152922_13	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0152922_14	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0152922_14	PHROG	phrog_25567	NA	unknown function
UHGV-0152922_14	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0152922_14	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0152922_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152922_14	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0152922_18	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0152922_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0152922_18	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0152922_18	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0152922_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0152922_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0152922_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0152922_18	COG	COG0863	DNA modification methylase	NA
UHGV-0152922_18	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0152922_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0152922_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0152922_20	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0152922_20	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0152922_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0152922_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0152922_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0152922_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0152922_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0152922_21	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0152922_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0152922_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152922_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0152922_23	PHROG	phrog_8680	NA	unknown function
UHGV-0152922_23	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0152922_23	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0152922_23	Pfam	PF14386	NA	DUF4417
UHGV-0152922_23	Structural annotation	PF14386	NA	NA
UHGV-0152922_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0152922_24	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0152922_24	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0152922_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0152922_24	COG	COG2369	NA	NA
UHGV-0152922_24	Structural annotation	PF06152	NA	NA
UHGV-0152922_25	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0152922_25	Structural annotation	PF06810	NA	NA
UHGV-0152922_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0152922_26	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0152922_26	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0152922_26	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0152922_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0152922_27	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0152922_28	PHROG	phrog_3366	NA	unknown function
UHGV-0152922_28	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0152922_28	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0152922_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0152922_29	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0152922_29	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0152922_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0152922_29	Structural annotation	PF11114	NA	NA
UHGV-0152922_30	PHROG	phrog_3266	tail completion	connector
UHGV-0152922_30	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0152922_30	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0152922_30	Structural annotation	PF12691	NA	NA
UHGV-0152922_31	PHROG	phrog_3099	NA	unknown function
UHGV-0152922_31	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0152922_31	Structural annotation	TIGR02126	NA	NA
UHGV-0152922_32	PHROG	phrog_11299	NA	unknown function
UHGV-0152922_32	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0152922_32	Structural annotation	PF10666	NA	NA
UHGV-0152922_33	PHROG	phrog_706	NA	unknown function
UHGV-0152922_33	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0152922_33	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0152922_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0152922_33	Structural annotation	PF06854	NA	NA
UHGV-0152922_34	PHROG	phrog_806	NA	unknown function
UHGV-0152922_34	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0152922_34	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0152922_34	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0152922_34	Pfam	PF11611	NA	DUF4352
UHGV-0152922_34	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0152922_35	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0152922_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152922_35	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0152922_35	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0152922_35	COG	COG1511	NA	NA
UHGV-0152922_35	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0152922_36	PHROG	phrog_1194	NA	unknown function
UHGV-0152922_36	eggNOG-mapper	60520.HR47_13415	NA	NA
UHGV-0152922_36	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0152922_37	PHROG	phrog_22212	NA	unknown function
UHGV-0152922_37	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0152922_37	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0152922_38	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0152922_38	Structural annotation	PF13550, NF041249, COG4926	NA	NA
UHGV-0152922_39	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0152922_39	Structural annotation	PF07238	NA	NA
UHGV-0152922_41	PHROG	phrog_38044	NA	unknown function
UHGV-0152922_41	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0152922_41	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0152922_41	Structural annotation	PF19079	NA	NA
UHGV-0152922_42	PHROG	phrog_4105	NA	unknown function
UHGV-0152922_42	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0152922_42	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0152922_43	PHROG	phrog_881	holin	lysis
UHGV-0152922_43	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0152922_43	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0152922_43	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0152922_43	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0152922_44	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0152922_44	PHROG	phrog_435	endolysin	lysis
UHGV-0152922_44	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0152922_44	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152922_44	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0152922_44	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0152922_44	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0152922_44	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0152922_46	PHROG	phrog_3754	NA	unknown function
UHGV-0152922_46	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0152922_47	PHROG	phrog_21718	NA	unknown function
UHGV-0152922_47	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0152922_48	PHROG	phrog_22984	NA	unknown function
UHGV-0152922_49	PHROG	phrog_16490	NA	unknown function
UHGV-0152922_49	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0152922_50	PHROG	phrog_20016	NA	unknown function
UHGV-0152922_50	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0152922_50	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0152922_50	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0152922_51	PHROG	phrog_28802	NA	unknown function
UHGV-0152922_51	Structural annotation	PF12510	NA	NA
UHGV-0152922_52	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA