UHGV-0152970

Genome information

Genome length 41,574 bps

CDS count 55

Completeness 99.29% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152970
vOTU ID	vOTU-070937
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_446751
BioSample	SAMN05971608
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.85
Jumbo phage	No

Genome content
Genome length	41,574 bps
GC content	36.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.23%
Average CDS length	693.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152970_2	UniRef90	UniRef90_A0A7H9E8L5	XkdX family protein	NA
UHGV-0152970_2	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0152970_3	PHROG	phrog_34343	NA	unknown function
UHGV-0152970_5	PHROG	phrog_1330	tail protein	tail
UHGV-0152970_5	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0152970_5	COG	COG1511	NA	NA
UHGV-0152970_7	PHROG	phrog_4467	NA	unknown function
UHGV-0152970_7	UniRef90	UniRef90_UPI00105FEB25	BppU family phage baseplate upper protein	NA
UHGV-0152970_7	eggNOG-mapper	1122147.AUEH01000027_gene2733	NA	NA
UHGV-0152970_9	PHROG	phrog_12493	tail protein	tail
UHGV-0152970_9	UniRef90	UniRef90_UPI0013FDDA3E	phage tail protein	NA
UHGV-0152970_9	eggNOG-mapper	1423767.BALU01000006_gene762	Phage minor structural protein	NA
UHGV-0152970_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0152970_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0152970_9	COG	COG4926	Phage-related protein	NA
UHGV-0152970_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0152970_10	UniRef90	UniRef90_C7XJ30	Putative phage tail component domain protein	NA
UHGV-0152970_10	eggNOG-mapper	1423767.BALU01000006_gene763	phage tail	NA
UHGV-0152970_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0152970_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0152970_11	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0152970_11	UniRef90	UniRef90_UPI00076120C6	tape measure protein	NA
UHGV-0152970_11	eggNOG-mapper	97137.C821_00040	Phage tail tape measure protein TP901	NA
UHGV-0152970_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0152970_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0152970_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0152970_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0152970_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0152970_11	Structural annotation	PF10145, TIGR01760, NF008096, COG5280	NA	NA
UHGV-0152970_12	PHROG	phrog_2629	NA	unknown function
UHGV-0152970_13	PHROG	phrog_1346	tail protein	tail
UHGV-0152970_13	Pfam	PF06896	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
UHGV-0152970_13	Structural annotation	PF06896	NA	NA
UHGV-0152970_14	PHROG	phrog_88	major tail protein	tail
UHGV-0152970_14	UniRef90	UniRef90_A0A4R6CTP5	Phage tail protein	NA
UHGV-0152970_14	eggNOG-mapper	1225795.K4I1X5_9CAUD	Pfam:Phage_TTP_1	NA
UHGV-0152970_14	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0152970_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0152970_15	PHROG	phrog_1217	tail protein	tail
UHGV-0152970_15	UniRef90	UniRef90_A0A556UAW1	NA	NA
UHGV-0152970_15	eggNOG-mapper	568703.LGG_01529	NA	NA
UHGV-0152970_15	Pfam	PF05657	NA	DUF806
UHGV-0152970_15	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0152970_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0152970_16	UniRef90	UniRef90_A0A6G5YP51	PH domain-containing protein	NA
UHGV-0152970_16	eggNOG-mapper	568703.LGG_01530	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0152970_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0152970_16	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0152970_17	UniRef90	UniRef90_A0A4R6CTB7	Head-tail adaptor protein	NA
UHGV-0152970_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0152970_18	UniRef90	UniRef90_UPI00156308FF	head-tail connector protein	NA
UHGV-0152970_18	eggNOG-mapper	1423758.BN55_04270	Phage gp6-like head-tail connector protein	NA
UHGV-0152970_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0152970_18	Structural annotation	TIGR01560	NA	NA
UHGV-0152970_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0152970_19	UniRef90	UniRef90_UPI00143173B9	phage major capsid protein	NA
UHGV-0152970_19	eggNOG-mapper	12417.Q9T1F6_9CAUD	peptidase activity	NA
UHGV-0152970_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0152970_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0152970_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0152970_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0152970_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0152970_20	UniRef90	UniRef90_A0A437SXZ9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0152970_20	eggNOG-mapper	1423758.BN55_04260	Belongs to the peptidase S14 family	NA
UHGV-0152970_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0152970_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0152970_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0152970_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0152970_21	UniRef90	UniRef90_UPI000760D368	phage portal protein	NA
UHGV-0152970_21	eggNOG-mapper	1423758.BN55_04255	Phage portal protein	NA
UHGV-0152970_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0152970_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0152970_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0152970_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0152970_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0152970_22	UniRef90	UniRef90_D0DKR8	Putative phage terminase, large subunit	NA
UHGV-0152970_22	eggNOG-mapper	1423758.BN55_04245	Phage Terminase	NA
UHGV-0152970_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0152970_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0152970_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0152970_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0152970_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0152970_24	UniRef90	UniRef90_UPI0007620FD2	phage terminase small subunit P27 family	NA
UHGV-0152970_24	eggNOG-mapper	1423758.BN55_04240	Phage terminase, small subunit	NA
UHGV-0152970_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0152970_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0152970_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0152970_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0152970_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152970_25	UniRef90	UniRef90_UPI00105BE363	HNH endonuclease	NA
UHGV-0152970_25	eggNOG-mapper	12417.Q9T1G1_9CAUD	HNH endonuclease	NA
UHGV-0152970_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0152970_25	Structural annotation	PF05766, TIGR02646	NA	NA
UHGV-0152970_26	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0152970_26	UniRef90	UniRef90_A0A135ZFR6	ArpU family transcriptional regulator	NA
UHGV-0152970_26	eggNOG-mapper	1203076.CAKF01000006_gene580	Transcriptional regulator, ArpU family	NA
UHGV-0152970_26	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0152970_26	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0152970_27	UniRef90	UniRef90_A0A135ZFN1	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0152970_28	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0152970_28	UniRef90	UniRef90_D0DKQ0	VRR-NUC domain protein	NA
UHGV-0152970_28	eggNOG-mapper	349123.Lreu23DRAFT_4223	VRR_NUC	NA
UHGV-0152970_28	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0152970_29	PHROG	phrog_29729	NA	unknown function
UHGV-0152970_35	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0152970_35	UniRef90	UniRef90_D0DKR0	Nucleoside triphosphatase, D5 family	NA
UHGV-0152970_35	eggNOG-mapper	1423814.HMPREF0549_0148	Phage plasmid primase, P4	NA
UHGV-0152970_35	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0152970_35	Pfam	PF19263	NA	DUF5906
UHGV-0152970_35	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0152970_35	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0152970_35	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0152970_35	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0152970_36	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152970_36	UniRef90	UniRef90_A0A437SY01	NA	NA
UHGV-0152970_36	eggNOG-mapper	1293597.BN147_08815	NA	NA
UHGV-0152970_36	Pfam	PF05037	NA	DUF669
UHGV-0152970_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152970_38	UniRef90	UniRef90_A0A0R1HA32	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0152970_38	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0152970_38	Structural annotation	PF17375	NA	NA
UHGV-0152970_39	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0152970_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0152970_39	UniRef90	UniRef90_D0DKQ8	Helicase C-terminal domain protein	NA
UHGV-0152970_39	eggNOG-mapper	334390.LAF_0464	Helicase C-terminal domain protein	NA
UHGV-0152970_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0152970_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0152970_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0152970_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0152970_39	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0152970_40	PHROG	phrog_37101	NA	unknown function
UHGV-0152970_40	UniRef90	UniRef90_A0A0R2D3K9	Phosphoglycerate mutase	NA
UHGV-0152970_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0152970_41	UniRef90	UniRef90_D0DKV8	Phage nucleotide-binding protein	NA
UHGV-0152970_41	eggNOG-mapper	1293597.BN147_08805	AAA domain	NA
UHGV-0152970_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0152970_41	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0152970_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0152970_43	PHROG	phrog_7634	NA	unknown function
UHGV-0152970_47	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0152970_47	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0152970_47	UniRef90	UniRef90_UPI000761E2B9	phage antirepressor KilAC domain-containing protein	NA
UHGV-0152970_47	eggNOG-mapper	1423807.BACO01000085_gene2467	AntA/AntB antirepressor	NA
UHGV-0152970_47	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0152970_47	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0152970_47	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0152970_47	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0152970_48	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152970_48	UniRef90	UniRef90_A0A8F8MHN2	XRE family transcriptional regulator	NA
UHGV-0152970_48	eggNOG-mapper	97137.C821_00648	NA	NA
UHGV-0152970_48	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0152970_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0152970_51	UniRef90	UniRef90_A0A4R6CU20	Transcriptional regulator	NA
UHGV-0152970_51	eggNOG-mapper	1423790.BN53_09880	Helix-turn-helix XRE-family like proteins	NA
UHGV-0152970_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0152970_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0152970_51	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0152970_52	PHROG	phrog_87	metallo-protease	other
UHGV-0152970_52	UniRef90	UniRef90_A0A4R6CTT4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0152970_52	eggNOG-mapper	1423807.BACO01000050_gene1468	Zn peptidase	NA
UHGV-0152970_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0152970_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0152970_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0152970_55	KOfam	K14059	int; integrase	NA
UHGV-0152970_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0152970_55	UniRef90	UniRef90_UPI00105DCC84	site-specific integrase	NA
UHGV-0152970_55	eggNOG-mapper	257314.LJ_0288	Belongs to the 'phage' integrase family	NA
UHGV-0152970_55	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0152970_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0152970_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0152970_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0152970_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA