UHGV-0152999

Genome information

Genome length 35,582 bps

CDS count 58

Completeness 68.65% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0152999
vOTU ID	vOTU-027567
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_476207
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.64
Jumbo phage	No

Genome content
Genome length	35,582 bps
GC content	53.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.52%
Average CDS length	584.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0152999_2	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0152999_4	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0152999_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0152999_4	COG	COG3103	NA	NA
UHGV-0152999_4	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-0152999_6	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0152999_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0152999_8	Structural annotation	PF10651, PF07703, MF_04116, NF032891, COG4326	NA	NA
UHGV-0152999_9	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0152999_9	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-0152999_9	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-0152999_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0152999_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0152999_9	COG	COG4926	Phage-related protein	NA
UHGV-0152999_10	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0152999_11	PHROG	phrog_28918	NA	unknown function
UHGV-0152999_11	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0152999_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0152999_12	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0152999_12	eggNOG-mapper	1173135.I4DSI5_9CAUD	endonuclease activity	NA
UHGV-0152999_12	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0152999_12	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0152999_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0152999_13	eggNOG-mapper	913865.DOT_2893	tape measure	NA
UHGV-0152999_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0152999_13	Structural annotation	PF06791	NA	NA
UHGV-0152999_16	PHROG	phrog_885	major tail protein	tail
UHGV-0152999_16	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-0152999_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0152999_17	Structural annotation	PF11367	NA	NA
UHGV-0152999_18	PHROG	phrog_17977	NA	unknown function
UHGV-0152999_18	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0152999_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0152999_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0152999_20	PHROG	phrog_29	major head protein	head and packaging
UHGV-0152999_20	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0152999_20	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0152999_20	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0152999_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0152999_20	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0152999_21	PHROG	phrog_909	major head protein	head and packaging
UHGV-0152999_21	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0152999_21	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0152999_21	Structural annotation	PF02924	NA	NA
UHGV-0152999_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0152999_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0152999_22	Structural annotation	PF06810	NA	NA
UHGV-0152999_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0152999_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0152999_23	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0152999_24	PHROG	phrog_859	portal protein	head and packaging
UHGV-0152999_24	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0152999_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0152999_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0152999_24	COG	COG2369	NA	NA
UHGV-0152999_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0152999_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0152999_26	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0152999_26	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0152999_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0152999_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0152999_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0152999_27	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-0152999_27	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0152999_27	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0152999_30	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0152999_31	PHROG	phrog_21498	NA	unknown function
UHGV-0152999_31	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0152999_31	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0152999_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0152999_31	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0152999_32	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0152999_32	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0152999_32	eggNOG-mapper	411483.FAEPRAA2165_02111	YodL-like	NA
UHGV-0152999_32	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0152999_33	PHROG	phrog_25027	NA	unknown function
UHGV-0152999_33	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-0152999_33	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0152999_33	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0152999_36	Structural annotation	PF01402, NF008671, COG4226	NA	NA
UHGV-0152999_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0152999_39	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0152999_39	Structural annotation	PF04545, MF_00674, NF001072, COG1342	NA	NA
UHGV-0152999_41	PHROG	phrog_824	NA	unknown function
UHGV-0152999_41	UniRef90	UniRef90_K1REM0	VRR-NUC domain protein	NA
UHGV-0152999_41	eggNOG-mapper	1408428.JNJP01000030_gene973	VRR_NUC	NA
UHGV-0152999_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0152999_44	PHROG	phrog_7964	NA	unknown function
UHGV-0152999_44	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0152999_44	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0152999_44	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0152999_44	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0152999_45	Structural annotation	PF06257, NF011227	NA	NA
UHGV-0152999_46	Structural annotation	TIGR03655	NA	NA
UHGV-0152999_48	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0152999_48	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0152999_48	Pfam	PF04448	NA	DUF551
UHGV-0152999_48	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0152999_48	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0152999_49	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0152999_49	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0152999_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0152999_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0152999_50	UniRef90	UniRef90_K1RYG5	Prophage antirepressor	NA
UHGV-0152999_50	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-0152999_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0152999_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0152999_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0152999_50	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0152999_51	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0152999_51	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0152999_51	UniRef90	UniRef90_K1UYR3	Replicative DNA helicase (Fragment)	NA
UHGV-0152999_51	eggNOG-mapper	395494.Galf_2031	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0152999_51	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0152999_51	COG	COG0305	Replicative DNA helicase	NA
UHGV-0152999_51	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0152999_52	UniRef90	UniRef90_K1TUR1	NA	NA
UHGV-0152999_52	Pfam	PF19808	NA	DUF6291
UHGV-0152999_52	Structural annotation	PF19808, COG3935	NA	NA
UHGV-0152999_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0152999_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0152999_53	UniRef90	UniRef90_K1U2S6	Single-strand DNA-binding protein	NA
UHGV-0152999_53	eggNOG-mapper	720554.Clocl_4133	Single-stranded DNA-binding protein	NA
UHGV-0152999_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0152999_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0152999_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0152999_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0152999_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0152999_54	PHROG	phrog_398	NA	unknown function
UHGV-0152999_54	UniRef90	UniRef90_K1U9S1	NA	NA
UHGV-0152999_54	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0152999_54	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0152999_54	Structural annotation	PF16784	NA	NA
UHGV-0152999_58	PHROG	phrog_6721	NA	unknown function
UHGV-0152999_58	eggNOG-mapper	679192.HMPREF9013_1123	NA	NA