UHGV-0153036

Genome information

Genome length 34,088 bps

CDS count 69

Completeness 59.24% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153036
vOTU ID	vOTU-027569
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479511
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.28
Jumbo phage	No

Genome content
Genome length	34,088 bps
GC content	36.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	83.90%
Average CDS length	419.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153036_1	eggNOG-mapper	658655.HMPREF0988_00887	chromosome segregation	NA
UHGV-0153036_1	COG	COG5410	NA	NA
UHGV-0153036_3	PHROG	phrog_14301	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0153036_3	UniRef90	UniRef90_UPI001ADCC41E	NA	NA
UHGV-0153036_3	eggNOG-mapper	1429046.RR21198_4862	NA	NA
UHGV-0153036_3	Pfam	PF17720	NA	DUF5565
UHGV-0153036_3	Structural annotation	PF17720	NA	NA
UHGV-0153036_10	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0153036_11	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0153036_12	UniRef90	UniRef90_A0A416S3G6	Helix-turn-helix domain-containing protein	NA
UHGV-0153036_13	eggNOG-mapper	476272.RUMHYD_01904	NA	NA
UHGV-0153036_14	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0153036_14	UniRef90	UniRef90_S0JDG3	HTH cro/C1-type domain-containing protein	NA
UHGV-0153036_14	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0153036_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0153036_14	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0153036_14	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0153036_17	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0153036_17	Structural annotation	PF18267	NA	NA
UHGV-0153036_19	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0153036_19	PHROG	phrog_216	integrase	integration and excision
UHGV-0153036_19	UniRef90	UniRef90_A0A3D5WQF7	Integrase	NA
UHGV-0153036_19	eggNOG-mapper	357809.Cphy_2102	Phage integrase family	NA
UHGV-0153036_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153036_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153036_19	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0153036_21	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0153036_21	UniRef90	UniRef90_F7JKF7	ORF6N domain-containing protein	NA
UHGV-0153036_21	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0153036_21	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0153036_21	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0153036_23	UniRef90	UniRef90_A0A1C5WHV3	RHH_3 domain-containing protein	NA
UHGV-0153036_23	eggNOG-mapper	665956.HMPREF1032_00120	NA	NA
UHGV-0153036_23	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0153036_23	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0153036_25	UniRef90	UniRef90_A0A373M343	Zinc-ribbon domain-containing protein	NA
UHGV-0153036_25	Structural annotation	PF12729	NA	NA
UHGV-0153036_26	PHROG	phrog_1233	NA	unknown function
UHGV-0153036_26	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0153036_26	Structural annotation	PF13058, COG2856	NA	NA
UHGV-0153036_27	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0153036_28	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-0153036_29	PHROG	phrog_16490	NA	unknown function
UHGV-0153036_29	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0153036_30	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0153036_31	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0153036_31	Structural annotation	NF033819	NA	NA
UHGV-0153036_32	eggNOG-mapper	658655.HMPREF0988_00920	NA	NA
UHGV-0153036_33	KOfam	K14059	int; integrase	NA
UHGV-0153036_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0153036_33	UniRef90	UniRef90_A0A3R6AEJ7	Site-specific integrase	NA
UHGV-0153036_33	eggNOG-mapper	742733.HMPREF9469_05559	COG COG4974 Site-specific recombinase XerD	NA
UHGV-0153036_33	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0153036_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0153036_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153036_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153036_33	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0153036_34	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0153036_34	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0153036_34	eggNOG-mapper	411467.BACCAP_04675	Excisionase from transposon Tn916	NA
UHGV-0153036_34	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0153036_34	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0153036_36	UniRef90	UniRef90_A0A8D9UJ07	Restriction endonuclease	NA
UHGV-0153036_39	PHROG	phrog_8684	NA	unknown function
UHGV-0153036_39	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-0153036_39	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0153036_39	Pfam	PF09643	YopX protein	YopX
UHGV-0153036_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0153036_41	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0153036_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153036_42	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153036_42	UniRef90	UniRef90_R6YQW5	HNH endonuclease	NA
UHGV-0153036_42	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0153036_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0153036_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153036_42	Structural annotation	COG1403	NA	NA
UHGV-0153036_43	PHROG	phrog_874	NA	unknown function
UHGV-0153036_43	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0153036_43	Pfam	PF04266	ASCH domain	ASCH
UHGV-0153036_43	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0153036_46	UniRef90	UniRef90_A0A416CEW1	ASCH domain-containing protein	NA
UHGV-0153036_46	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-0153036_46	Pfam	PF04266	ASCH domain	ASCH
UHGV-0153036_46	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0153036_46	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0153036_47	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0153036_48	PHROG	phrog_23490	NA	unknown function
UHGV-0153036_48	UniRef90	UniRef90_UPI0019D6D15B	NA	NA
UHGV-0153036_48	eggNOG-mapper	1122918.KB907248_gene4513	NA	NA
UHGV-0153036_49	eggNOG-mapper	610130.Closa_1375	NA	NA
UHGV-0153036_51	Structural annotation	PF13069	NA	NA
UHGV-0153036_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153036_52	PHROG	phrog_17284	NA	unknown function
UHGV-0153036_52	UniRef90	UniRef90_UPI0012BCFC8B	DNA cytosine methyltransferase	NA
UHGV-0153036_52	eggNOG-mapper	1123299.AUKZ01000016_gene1713	C-5 cytosine-specific DNA methylase	NA
UHGV-0153036_52	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0153036_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153036_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153036_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153036_53	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0153036_53	UniRef90	UniRef90_UPI0012BC1D1E	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153036_53	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0153036_53	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0153036_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153036_53	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153036_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153036_53	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0153036_55	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0153036_55	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0153036_55	UniRef90	UniRef90_R9KLJ0	ATPase domain-containing protein	NA
UHGV-0153036_55	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0153036_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0153036_55	COG	COG0305	Replicative DNA helicase	NA
UHGV-0153036_55	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0153036_56	PHROG	phrog_1163	NA	unknown function
UHGV-0153036_56	UniRef90	UniRef90_UPI001D0BCA6A	conserved phage C-terminal domain-containing protein	NA
UHGV-0153036_56	eggNOG-mapper	324831.LGAS_0583	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0153036_56	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0153036_56	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0153036_56	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0153036_56	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0153036_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153036_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153036_57	UniRef90	UniRef90_A0A1Q6KA57	Single-stranded DNA-binding protein	NA
UHGV-0153036_57	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0153036_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153036_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153036_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153036_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153036_57	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0153036_58	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153036_58	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0153036_58	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0153036_58	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0153036_59	PHROG	phrog_3657	NA	unknown function
UHGV-0153036_59	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0153036_62	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0153036_62	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0153036_62	UniRef90	UniRef90_A0A011UJY5	NA	NA
UHGV-0153036_62	eggNOG-mapper	32024.JMTI01000026_gene1431	NA	NA
UHGV-0153036_62	Pfam	PF12684	NA	DUF3799
UHGV-0153036_62	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0153036_64	PHROG	phrog_26861	NA	unknown function
UHGV-0153036_64	UniRef90	UniRef90_A0A410PU66	Single-stranded DNA-binding protein	NA
UHGV-0153036_64	eggNOG-mapper	397290.C810_01452	Single-strand binding protein family	NA
UHGV-0153036_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153036_64	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0153036_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153036_64	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0153036_66	PHROG	phrog_22529	NA	unknown function
UHGV-0153036_66	UniRef90	UniRef90_A0A0B3VPU3	G5 domain-containing protein	NA
UHGV-0153036_66	eggNOG-mapper	877420.ATVW01000029_gene1358	3D domain	NA
UHGV-0153036_66	Pfam	PF06725	3D domain	3D
UHGV-0153036_66	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0153036_66	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0153036_67	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0153036_67	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0153036_67	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0153036_67	eggNOG-mapper	667015.Bacsa_2685	BRO family, N-terminal domain	NA
UHGV-0153036_67	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0153036_67	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0153036_67	COG	COG3617	Prophage antirepressor	NA
UHGV-0153036_67	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0153036_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153036_68	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0153036_68	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0153036_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153036_68	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153036_68	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0153036_69	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153036_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153036_69	UniRef90	UniRef90_A0A1M7MZP5	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0153036_69	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0153036_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153036_69	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153036_69	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA