UHGV-0153081

Genome information

Genome length 29,238 bps

CDS count 38

Completeness 77.82% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153081
vOTU ID	vOTU-027571
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_480514
BioSample	SAMN06115454
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.92
Jumbo phage	No

Genome content
Genome length	29,238 bps
GC content	51.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	95.09%
Average CDS length	734.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153081_2	PHROG	phrog_7338	NA	unknown function
UHGV-0153081_2	UniRef90	UniRef90_UPI000561DC32	helix-turn-helix domain-containing protein	NA
UHGV-0153081_2	eggNOG-mapper	574376.BAMA_15580	Helix-turn-helix domain	NA
UHGV-0153081_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0153081_2	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0153081_3	PHROG	phrog_14367	NA	unknown function
UHGV-0153081_3	UniRef90	UniRef90_E4L8C9	LysM domain-containing protein	NA
UHGV-0153081_3	eggNOG-mapper	568816.Acin_1857	LysM domain	NA
UHGV-0153081_3	Pfam	PF01476	LysM domain	LysM
UHGV-0153081_3	COG	COG1388	LysM repeat	NA
UHGV-0153081_3	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0153081_8	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0153081_9	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0153081_9	PHROG	phrog_1499	NA	unknown function
UHGV-0153081_9	UniRef90	UniRef90_A0A8E3ZJD7	AAA_23 domain-containing protein	NA
UHGV-0153081_9	eggNOG-mapper	1123511.KB905868_gene202	AAA domain	NA
UHGV-0153081_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-0153081_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153081_9	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0153081_10	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153081_10	UniRef90	UniRef90_A0A3A8U6N7	ATP-binding protein	NA
UHGV-0153081_10	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0153081_10	Pfam	PF13479	AAA domain	AAA_24
UHGV-0153081_10	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0153081_11	PHROG	phrog_2698	NA	unknown function
UHGV-0153081_11	UniRef90	UniRef90_A0A5F0K1Y3	NA	NA
UHGV-0153081_11	eggNOG-mapper	910314.HMPREF9220_0633	NA	NA
UHGV-0153081_11	Structural annotation	PF05037	NA	NA
UHGV-0153081_12	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0153081_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0153081_12	UniRef90	UniRef90_A0A8D5A5D7	Putative DEAD box family helicase, phage associated	NA
UHGV-0153081_12	eggNOG-mapper	1000588.HMPREF9965_1718	DEAD-like helicases superfamily	NA
UHGV-0153081_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0153081_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0153081_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0153081_12	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0153081_12	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0153081_13	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0153081_13	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0153081_13	UniRef90	UniRef90_A0A8D5A566	PriCT_2 domain-containing protein	NA
UHGV-0153081_13	eggNOG-mapper	910314.HMPREF9220_0631	Primase C terminal 2 (PriCT-2)	NA
UHGV-0153081_13	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0153081_13	Pfam	PF13481	AAA domain	AAA_25
UHGV-0153081_13	COG	COG3598	RecA-family ATPase	NA
UHGV-0153081_13	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0153081_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0153081_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153081_14	UniRef90	UniRef90_E4LA60	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0153081_14	eggNOG-mapper	910314.HMPREF9220_0627	crossover junction endodeoxyribonuclease	NA
UHGV-0153081_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0153081_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0153081_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0153081_15	PHROG	phrog_16126	NA	unknown function
UHGV-0153081_16	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0153081_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153081_17	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-0153081_17	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0153081_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153081_20	UniRef90	UniRef90_UPI0008D9916E	NA	NA
UHGV-0153081_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0153081_21	UniRef90	UniRef90_UPI0008D9BB34	terminase large subunit	NA
UHGV-0153081_21	eggNOG-mapper	742743.HMPREF9453_00567	large subunit	NA
UHGV-0153081_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0153081_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0153081_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0153081_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0153081_22	UniRef90	UniRef90_UPI00094F3068	head-tail connector protein	NA
UHGV-0153081_22	eggNOG-mapper	469617.FUAG_00838	Phage gp6-like head-tail connector protein	NA
UHGV-0153081_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0153081_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0153081_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0153081_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0153081_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0153081_23	UniRef90	UniRef90_UPI000FF6F232	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0153081_23	eggNOG-mapper	742743.HMPREF9453_00565	serine-type endopeptidase activity	NA
UHGV-0153081_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0153081_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0153081_23	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0153081_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0153081_24	UniRef90	UniRef90_UPI00094F25F3	phage portal protein	NA
UHGV-0153081_24	eggNOG-mapper	742743.HMPREF9453_00564	Phage portal protein, HK97 family	NA
UHGV-0153081_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0153081_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0153081_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0153081_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0153081_25	Pfam	PF11836	Phage tail tube protein, GTA-gp10	Phage_TAC_11
UHGV-0153081_25	Structural annotation	PF19591	NA	NA
UHGV-0153081_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0153081_27	UniRef90	UniRef90_H1CYX3	HK97 family phage major capsid protein	NA
UHGV-0153081_27	eggNOG-mapper	742743.HMPREF9453_00561	Phage capsid family	NA
UHGV-0153081_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0153081_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0153081_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0153081_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0153081_28	UniRef90	UniRef90_UPI00034E17BA	head-tail adaptor protein	NA
UHGV-0153081_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0153081_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0153081_29	Structural annotation	PF16807	NA	NA
UHGV-0153081_30	PHROG	phrog_1407	major tail protein	tail
UHGV-0153081_30	UniRef90	UniRef90_UPI00034E16F7	phage tail tube protein	NA
UHGV-0153081_30	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0153081_30	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0153081_30	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0153081_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0153081_32	PHROG	phrog_13338	NA	unknown function
UHGV-0153081_32	UniRef90	UniRef90_H1CYW8	Tape measure domain-containing protein	NA
UHGV-0153081_32	eggNOG-mapper	742743.HMPREF9453_00556	tape measure	NA
UHGV-0153081_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153081_32	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0153081_33	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0153081_33	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0153081_33	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0153081_33	Pfam	PF09343	NA	DUF2460
UHGV-0153081_33	COG	COG5448	NA	NA
UHGV-0153081_33	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0153081_34	PHROG	phrog_778	tail assembly protein	tail
UHGV-0153081_34	UniRef90	UniRef90_A0A3B9DWJ4	NA	NA
UHGV-0153081_34	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-0153081_34	Pfam	PF09931	NA	DUF2163
UHGV-0153081_34	COG	COG5449	NA	NA
UHGV-0153081_34	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0153081_35	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0153081_35	PHROG	phrog_329	minor tail protein	tail
UHGV-0153081_35	UniRef90	UniRef90_A0A3B9DUZ7	Hydrolase	NA
UHGV-0153081_35	eggNOG-mapper	742743.HMPREF9453_00553	cysteine-type peptidase activity	NA
UHGV-0153081_35	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0153081_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0153081_35	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0153081_36	PHROG	phrog_1101	tail protein	tail
UHGV-0153081_36	UniRef90	UniRef90_A0A3B9DV75	Phage-tail_3 domain-containing protein	NA
UHGV-0153081_36	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0153081_36	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0153081_36	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0153081_36	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0153081_37	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0153081_37	COG	COG4675	Phage tail collar domain	NA
UHGV-0153081_38	KOfam	K14059	int; integrase	NA
UHGV-0153081_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0153081_38	UniRef90	UniRef90_H1CYW2	Tyr recombinase domain-containing protein	NA
UHGV-0153081_38	eggNOG-mapper	742743.HMPREF9453_00550	Phage integrase family	NA
UHGV-0153081_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153081_38	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0153081_38	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA