UHGV-0153140

Genome information

Genome length 31,329 bps

CDS count 50

Completeness 91.39% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153140
vOTU ID	vOTU-062141
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_478122
BioSample	SAMN06115436
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.97
Jumbo phage	No

Genome content
Genome length	31,329 bps
GC content	52.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.52%
Average CDS length	589.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153140_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0153140_1	PHROG	phrog_291	endolysin	lysis
UHGV-0153140_1	UniRef90	UniRef90_UPI00068B8D82	glycoside hydrolase family 25 protein	NA
UHGV-0153140_1	eggNOG-mapper	877411.JMMA01000002_gene2608	hydrolase, family 25	NA
UHGV-0153140_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153140_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0153140_1	Structural annotation	PF01183, NF003812, COG3757	NA	NA
UHGV-0153140_2	PHROG	phrog_1863	NA	unknown function
UHGV-0153140_2	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0153140_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0153140_3	PHROG	phrog_13256	NA	unknown function
UHGV-0153140_3	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0153140_5	UniRef90	UniRef90_UPI001D08D8A2	phage baseplate upper protein	NA
UHGV-0153140_7	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0153140_7	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0153140_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0153140_8	PHROG	phrog_1194	NA	unknown function
UHGV-0153140_8	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0153140_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0153140_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0153140_9	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0153140_9	eggNOG-mapper	1236497.BAJQ01000020_gene1850	nuclear chromosome segregation	NA
UHGV-0153140_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153140_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0153140_10	PHROG	phrog_706	NA	unknown function
UHGV-0153140_10	UniRef90	UniRef90_UPI00051C36A4	Gp15 family bacteriophage protein	NA
UHGV-0153140_10	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0153140_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0153140_10	Structural annotation	PF06854	NA	NA
UHGV-0153140_11	PHROG	phrog_11299	NA	unknown function
UHGV-0153140_11	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0153140_11	Structural annotation	PF10666	NA	NA
UHGV-0153140_12	PHROG	phrog_3099	NA	unknown function
UHGV-0153140_12	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0153140_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0153140_13	PHROG	phrog_3266	tail completion	connector
UHGV-0153140_13	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0153140_13	Structural annotation	PF20765	NA	NA
UHGV-0153140_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0153140_14	UniRef90	UniRef90_A0A3C0QTS8	Capsid protein	NA
UHGV-0153140_14	Structural annotation	PF11114	NA	NA
UHGV-0153140_15	eggNOG-mapper	1321372.AQQB01000060_gene66	NA	NA
UHGV-0153140_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0153140_16	UniRef90	UniRef90_R6C7E8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0153140_16	eggNOG-mapper	585203.SMSK564_1282	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0153140_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-0153140_16	Structural annotation	PF09355	NA	NA
UHGV-0153140_17	PHROG	phrog_32396	NA	unknown function
UHGV-0153140_17	UniRef90	UniRef90_A0A6L5X5D1	Phage major capsid protein	NA
UHGV-0153140_17	eggNOG-mapper	706433.HMPREF9430_01265	Phage capsid family	NA
UHGV-0153140_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0153140_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0153140_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0153140_18	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0153140_18	UniRef90	UniRef90_A0A373VN88	NA	NA
UHGV-0153140_18	eggNOG-mapper	936375.HMPREF1152_0678	NA	NA
UHGV-0153140_18	Structural annotation	PF14265	NA	NA
UHGV-0153140_19	PHROG	phrog_17688	NA	unknown function
UHGV-0153140_19	UniRef90	UniRef90_A0A3C2BAA2	Terminase	NA
UHGV-0153140_19	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0153140_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0153140_19	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0153140_20	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153140_20	UniRef90	UniRef90_A0A011WMC8	HNH endonuclease	NA
UHGV-0153140_20	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0153140_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0153140_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153140_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0153140_21	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0153140_21	eggNOG-mapper	1384065.JAGS01000001_gene524	NA	NA
UHGV-0153140_21	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0153140_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0153140_22	UniRef90	UniRef90_A0A373V3S0	Phage portal protein	NA
UHGV-0153140_22	eggNOG-mapper	1232446.BAIE02000011_gene1602	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0153140_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0153140_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153140_23	UniRef90	UniRef90_R6CIY5	Sigma70_r4_2 domain-containing protein	NA
UHGV-0153140_23	Structural annotation	PF07374	NA	NA
UHGV-0153140_24	PHROG	phrog_25754	NA	unknown function
UHGV-0153140_24	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0153140_24	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0153140_25	PHROG	phrog_22543	NA	unknown function
UHGV-0153140_28	PHROG	phrog_824	NA	unknown function
UHGV-0153140_28	UniRef90	UniRef90_UPI001D085623	VRR-NUC domain-containing protein	NA
UHGV-0153140_28	eggNOG-mapper	411902.CLOBOL_03887	VRR_NUC	NA
UHGV-0153140_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0153140_28	Structural annotation	PF08774	NA	NA
UHGV-0153140_29	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0153140_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0153140_29	UniRef90	UniRef90_A0A373V5W0	ATP-dependent helicase	NA
UHGV-0153140_29	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0153140_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0153140_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0153140_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0153140_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0153140_29	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0153140_30	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0153140_30	UniRef90	UniRef90_UPI001D098DCD	NA	NA
UHGV-0153140_30	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0153140_30	Pfam	PF06048	NA	DUF927
UHGV-0153140_30	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0153140_30	COG	COG5519	NA	NA
UHGV-0153140_30	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0153140_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153140_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153140_31	UniRef90	UniRef90_UPI001D089125	single-stranded DNA-binding protein	NA
UHGV-0153140_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153140_31	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0153140_32	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153140_32	UniRef90	UniRef90_UPI001D074BCC	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0153140_32	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-0153140_32	Pfam	PF12684	NA	DUF3799
UHGV-0153140_32	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0153140_32	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0153140_33	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153140_33	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0153140_33	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-0153140_33	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0153140_35	UniRef90	UniRef90_UPI001D0829A9	helix-turn-helix domain-containing protein	NA
UHGV-0153140_35	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0153140_38	Structural annotation	PF11372	NA	NA
UHGV-0153140_40	eggNOG-mapper	526218.Sterm_0798	NA	NA
UHGV-0153140_42	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153140_42	UniRef90	UniRef90_A0A373SN33	NA	NA
UHGV-0153140_42	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0153140_42	Structural annotation	COG2250	NA	NA
UHGV-0153140_43	PHROG	phrog_14088	NA	unknown function
UHGV-0153140_43	UniRef90	UniRef90_UPI001D084DAA	carboxypeptidase	NA
UHGV-0153140_43	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0153140_44	UniRef90	UniRef90_A0A373XXU1	XRE family transcriptional regulator	NA
UHGV-0153140_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0153140_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153140_45	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0153140_45	eggNOG-mapper	1160721.RBI_I01471	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0153140_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0153140_45	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0153140_46	UniRef90	UniRef90_UPI001D0998B8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0153140_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0153140_46	Structural annotation	PF06114	NA	NA
UHGV-0153140_50	KOfam	K14059	int; integrase	NA
UHGV-0153140_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0153140_50	UniRef90	UniRef90_R6CF36	Integrase	NA
UHGV-0153140_50	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-0153140_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153140_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153140_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153140_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA