UHGV-0153240

Genome information

Genome length 25,413 bps

CDS count 55

Completeness 54.66% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153240
vOTU ID	vOTU-027582
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484509
BioSample	SAMN06110134
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.62
Jumbo phage	No

Genome content
Genome length	25,413 bps
GC content	53.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	85.93%
Average CDS length	402.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153240_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153240_2	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0153240_2	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0153240_2	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0153240_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153240_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0153240_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153240_4	UniRef90	UniRef90_A0A1C7FQT4	Transcriptional regulator	NA
UHGV-0153240_4	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0153240_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153240_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153240_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0153240_5	PHROG	phrog_924	NA	unknown function
UHGV-0153240_5	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0153240_5	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0153240_5	Pfam	PF04448	NA	DUF551
UHGV-0153240_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153240_5	Structural annotation	NF041588	NA	NA
UHGV-0153240_6	PHROG	phrog_8684	NA	unknown function
UHGV-0153240_6	UniRef90	UniRef90_UPI00195CB2B3	YopX family protein	NA
UHGV-0153240_6	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0153240_6	Pfam	PF09643	YopX protein	YopX
UHGV-0153240_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0153240_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0153240_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0153240_7	UniRef90	UniRef90_A0A1C6HEP0	HTH-type transcriptional regulator sinR	NA
UHGV-0153240_7	eggNOG-mapper	748224.HMPREF9436_02633	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0153240_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0153240_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153240_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153240_9	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0153240_10	Structural annotation	NF000937	NA	NA
UHGV-0153240_11	PHROG	phrog_25732	NA	unknown function
UHGV-0153240_11	Structural annotation	NF011227	NA	NA
UHGV-0153240_13	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0153240_14	UniRef90	UniRef90_UPI0018AC14ED	Lar family restriction alleviation protein	NA
UHGV-0153240_14	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0153240_14	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0153240_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153240_15	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0153240_15	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-0153240_15	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0153240_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0153240_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153240_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153240_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153240_15	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0153240_16	Structural annotation	PF12759	NA	NA
UHGV-0153240_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0153240_17	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153240_17	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0153240_17	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0153240_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0153240_18	PHROG	phrog_9804	NA	unknown function
UHGV-0153240_18	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0153240_18	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0153240_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0153240_18	Structural annotation	PF11417	NA	NA
UHGV-0153240_19	PHROG	phrog_15768	NA	unknown function
UHGV-0153240_19	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0153240_19	Pfam	PF19808	NA	DUF6291
UHGV-0153240_19	Structural annotation	PF19808	NA	NA
UHGV-0153240_20	PHROG	phrog_18107	NA	unknown function
UHGV-0153240_20	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0153240_20	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0153240_20	Structural annotation	PF05037	NA	NA
UHGV-0153240_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153240_21	UniRef90	UniRef90_UPI00058FD242	AAA family ATPase	NA
UHGV-0153240_21	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0153240_21	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0153240_23	Structural annotation	PF09943	NA	NA
UHGV-0153240_27	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0153240_27	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0153240_32	UniRef90	UniRef90_A0A0A7S0N3	XRE family transcriptional regulator	NA
UHGV-0153240_32	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0153240_32	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0153240_33	UniRef90	UniRef90_UPI0018AA364F	helix-turn-helix transcriptional regulator	NA
UHGV-0153240_33	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0153240_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153240_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0153240_33	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0153240_35	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0153240_35	PHROG	phrog_10292	NA	unknown function
UHGV-0153240_35	UniRef90	UniRef90_A0A355UYQ5	TM2 domain-containing protein	NA
UHGV-0153240_35	eggNOG-mapper	1514668.JOOA01000002_gene3146	TM2 domain	NA
UHGV-0153240_35	Pfam	PF05154	TM2 domain	TM2
UHGV-0153240_35	COG	COG2314	NA	NA
UHGV-0153240_36	PHROG	phrog_33872	NA	unknown function
UHGV-0153240_37	KOfam	K14059	int; integrase	NA
UHGV-0153240_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0153240_37	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-0153240_37	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0153240_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153240_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0153240_37	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0153240_38	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0153240_39	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0153240_40	PHROG	phrog_16490	NA	unknown function
UHGV-0153240_40	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0153240_42	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0153240_44	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0153240_45	PHROG	phrog_4105	NA	unknown function
UHGV-0153240_45	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0153240_46	PHROG	phrog_1129	holin	lysis
UHGV-0153240_46	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0153240_46	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0153240_46	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153240_46	Structural annotation	PF06946	NA	NA
UHGV-0153240_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0153240_47	PHROG	phrog_18955	NA	unknown function
UHGV-0153240_47	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0153240_47	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0153240_47	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0153240_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0153240_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0153240_47	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0153240_50	PHROG	phrog_27545	NA	unknown function
UHGV-0153240_50	UniRef90	UniRef90_C6LG78	Carbohydrate binding domain protein	NA
UHGV-0153240_50	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0153240_51	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0153240_52	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0153240_52	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0153240_54	PHROG	phrog_1084	NA	unknown function
UHGV-0153240_54	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0153240_54	Structural annotation	PF16407, NF032891, COG5456	NA	NA